Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02435 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTCCACGAGCCAAACTTCCGGGTTGGTGGTTCCTATGATGAAAGAAGGTTTATAGATGAAAGATATCCAAGGGATGCTGTTTACCAGAGAAATAATTTCCACCGTGACATTTTGGATAGGGAGGCCTATCTGCCGCCAGGACCTCCTGTTGGCCACTGGAGTCAATCCAAACGGAGAGGTTATGATGAAGATTATCCACTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATGATCAGATGGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGATCGAGGATATGATAAACCTGCCAGGTTTGTAGGACATGACCGTGATGATTATGCATATGATGATTATGACTACAAGTCCCAGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGAATATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGGAGAGATAGTAATTGGAGGCGACGCGAATCACATGATCGGGAACGAGATAAGAGAGGTCATAGTCGGGAAAGAGATCTGAGTCCACATAGGAGACATGAGCGTTCTCGTTCACATTCTCGTTCTCGATCTCGTTCACCTTCTCGATCCCGGTCTCATTCCCATTCCCATTCTCATTCCCGATCTCAATCTCGTGGATATGATGACCATCCAAAATCTAGGTCCCCTCGAGGTCGAAGCCATGGTCGAAGTTATAGGGAAGATAGCTATACTGACAGTCGATATGACAAAAATGAAAGACGTAGGGATCGTGATGATAAACGTCAGAGGGAGCATTATTCTGTGGCCCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGCCCTCTCCGCCATGTTCGCGTTATAAAGGAGAGGAATTCTGGTGTCTCTCGTGGATTTGCATTTATTGATTTTCCTTCAGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGGGATGATGGTCTTGTTGTGGATGGCAGAAAACTTTTCTTTGAATATAGTAGTAAGCCAACCGGAGGTCCTGGTCCAGATGGAACTATGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTATATGTGGCTACATAAATTTTGCACGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGAACAGATGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAGCAGCTGTAGGAAAGAAAGGTTTGGAGGCAGGTCCGACTCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGAACTATGCTTGTAAAGAATGGGCAAATTCTAAGAGTGGCATATGCAAAAAGTATACTGGGCCCTGGATCAGGAGCATCTGGAACTTCCCAATCAAGCAGTCTTGCAGCAGCTGCTATTGAGGCTGCGACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAATCCAGATGACAAACAATCTACTGGTCCAGAGAAAACTGGCACAGAAGCTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTTCTTCTGGGTTTTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACATACCTTGTAATGATCAAAATCAGAATAAAACATCTAATAACGAGTCTGAACCGTCTAAGGCATCTGATGGTTCCGGAAGTAAAAAGGTTATTTCTGCACCAGCTACTACTGTTACATCAGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTCCAGGCTGCAGCAACTGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAGGGCAAAGGAAATAAAACTTGCCTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAAAGGAGCCATGAGGGGCAGGCTACTCGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTTCTGGACATTCTGCAAAGAATAAGTTAAAAAATGAGACTATGGTAAGGGAAAGTAATGCTTCTAATCCAGGAATTCACACAACTCTTGCCCAGGTTGCTGCTATTGATTCTCAGGCACAGCCACGGCCTGTTAGTAATAGTCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCGGGAAGAGGGGTTGTTAAATCAGATATTTATTCAGGTTCTACATCTGTTGCATCATCTATGCCAATTTCATCTTCAGCAAATGTTGATGCACAGACTGTTGCTACTCCCTTTAGAACAGATGTATCTGCCCTGGGTTCATATACACCATCTGCGACTGTTGGAGGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAACTTACAAGGAACAACCTCAAACAACTTACAGGGATCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGATTTGGCTGACCTTGAAATTGGGGATTCAAATCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCATTCCCTCCTGGGGTTGGTGGAGGACGCATAGTTGGAGATGCCAACCTGGATACTTTTGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTCGGTAATCGGATGCTTCGCAACATGGGCTGGCAAGAAGGATTGGGACTAGGAAAGGATGGAAGTGGAATGGTAGAGCCTGTCCTGGCACAAGCCACAGAAAATAGGGCCGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGGGACAGTTACAAGATGCTTATTCACAAAAAAGCACTTGCCAGGTTTCGGGATATGTCATAG 3201 0.4467 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGSYDERRFIDERYPRDAVYQRNNFHRDILDREAYLPPGPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYDQMDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFVGHDRDDYAYDDYDYKSQASSHHRREDSHEREYDHGRHSYDSDYERGSRRDSNWRRRESHDRERDKRGHSRERDLSPHRRHERSRSHSRSRSRSPSRSRSHSHSHSHSRSQSRGYDDHPKSRSPRGRSHGRSYREDSYTDSRYDKNERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGTMKSGHNYKSITVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSAAVGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLVKNGQILRVAYAKSILGPGSGASGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGPEKTGTEAGAPQSGFVWDEASGYYYDASSGFYYDGNTGLYYDGNNGIWYSYDHQTQQYIPCNDQNQNKTSNNESEPSKASDGSGSKKVISAPATTVTSVEKPASLADAVQAAATAALAAEKKEKERAKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSSGHSAKNKLKNETMVRESNASNPGIHTTLAQVAAIDSQAQPRPVSNSLGGTVMGVIRGSGRGVVKSDIYSGSTSVASSMPISSSANVDAQTVATPFRTDVSALGSYTPSATVGGGRRRFSEMPHSASTYKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSNRDFASRKGDPMPFPPGVGGGRIVGDANLDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMVEPVLAQATENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFRDMS 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02435 1066 MobiDBLite consensus disorder prediction 62 101 - -
Pumo4g02435 1066 SMART rrm1_1 471 546 IPR000504 GO:0003723
Pumo4g02435 1066 SMART rrm1_1 314 389 IPR000504 GO:0003723
Pumo4g02435 1066 ProSitePatterns Zinc finger RanBP2-type signature. 419 438 IPR001876 -
Pumo4g02435 1066 MobiDBLite consensus disorder prediction 767 787 - -
Pumo4g02435 1066 SUPERFAMILY RNA-binding domain, RBD 468 555 IPR035979 GO:0003676
Pumo4g02435 1066 SUPERFAMILY RNA-binding domain, RBD 303 398 IPR035979 GO:0003676
Pumo4g02435 1066 Pfam OCRE domain 612 660 IPR041591 -
Pumo4g02435 1066 MobiDBLite consensus disorder prediction 255 307 - -
Pumo4g02435 1066 MobiDBLite consensus disorder prediction 79 101 - -
Pumo4g02435 1066 MobiDBLite consensus disorder prediction 228 254 - -
Pumo4g02435 1066 MobiDBLite consensus disorder prediction 162 310 - -
Pumo4g02435 1066 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 393 IPR000504 GO:0003723
Pumo4g02435 1066 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 470 550 IPR000504 GO:0003723
Pumo4g02435 1066 PANTHER RNA-BINDING PROTEIN 204 1063 - -
Pumo4g02435 1066 SMART G-patch_5 988 1034 IPR000467 GO:0003676
Pumo4g02435 1066 Gene3D - 455 605 IPR012677 -
Pumo4g02435 1066 Gene3D - 277 413 IPR012677 -
Pumo4g02435 1066 MobiDBLite consensus disorder prediction 162 227 - -
Pumo4g02435 1066 CDD OCRE_SUA_like 608 661 IPR035623 -
Pumo4g02435 1066 ProSiteProfiles G-patch domain profile. 990 1036 IPR000467 GO:0003676
Pumo4g02435 1066 MobiDBLite consensus disorder prediction 888 918 - -
Pumo4g02435 1066 CDD RRM1_RRM2_RBM5_like 468 548 - -
Pumo4g02435 1066 ProSiteProfiles Zinc finger RanBP2 type profile. 415 444 IPR001876 -
Pumo4g02435 1066 SMART zf_4 417 441 IPR001876 -
Pumo4g02435 1066 MobiDBLite consensus disorder prediction 661 688 - -
Pumo4g02435 1066 MobiDBLite consensus disorder prediction 588 612 - -
Pumo4g02435 1066 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 472 536 IPR000504 GO:0003723
Pumo4g02435 1066 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 374 IPR000504 GO:0003723
Pumo4g02435 1066 Pfam G-patch domain 991 1032 IPR000467 GO:0003676
Pumo4g02435 1066 Gene3D - 414 445 - -
Pumo4g02435 1066 SUPERFAMILY Ran binding protein zinc finger-like 410 445 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02435 Pumo-Chr4 38369790 38378367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02435 312 534 Eukaryotic Initiation Factors Gene Family AT2G36660 25.200 2.88e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02435 K13094 - gmx:100777686 1871.29