Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02421 ATGGAGAGGTACAAGTTAATTAAGGAAGTTGGTGATGGAACATTTGGGACTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTGTTGCAATCAAGAAAATGAAGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGTCATTACGAAAAATGAATCATCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAATGTGACACTCTCTGCCTTGTTTTTGAGTACATGGAATACAACCTGTACCAACTTATGAAAAACAGGGAAAAGCTGTTTTCTGAAAATGAAATTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCAGCGTGGATACTTTCATCGTGATCTGAAGCCTGAAAACTTGCTGGTCACCAAGGATGTCATCAAGATTGCTGATTTTGGCCTAGCCCGAGAGATCAGTTCACAACCACCCTATACTGAGTATGTCTCCACACGATGGTATCGTGCTCCTGAAGTCCTGCCTTCAGTCCCATCTATATAG 531 0.4011 MERYKLIKEVGDGTFGTVWRAINKQSGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRECDTLCLVFEYMEYNLYQLMKNREKLFSENEIRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDVIKIADFGLAREISSQPPYTEYVSTRWYRAPEVLPSVPSI 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02421 176 SMART serkin_6 4 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02421 176 ProSiteProfiles Protein kinase domain profile. 4 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02421 176 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Pumo4g02421 176 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Pumo4g02421 176 FunFam cyclin-dependent kinase F-4-like 1 83 - -
Pumo4g02421 176 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 170 - -
Pumo4g02421 176 Gene3D Transferase(Phosphotransferase) domain 1 80 174 - -
Pumo4g02421 176 Pfam Protein kinase domain 4 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02421 176 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Pumo4g02421 176 SUPERFAMILY Protein kinase-like (PK-like) 1 172 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02421 Pumo-Chr4 38060195 38061460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02421 1 170 Core Cell Cycle Gene Families AT1G66750 39.548 1.37e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Pumo4g02421 Pkinase 1.2e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02421 K08829 - gmx:100819558 346.665