Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02420 ATGGAGAAAACAAGGCCCTCAGACCAAGTTGTTCTCTTCCTCGACCAGCACAATAACCCTAAACCACCCTCCATGGAACCCGAAAATCATCATCAAGACAAACCCAAATACCCCTTAAAAGTAAGAACTCTCAACCGTCTCAGCTTCTCAAAACCCAAATCAAGAATCCTAGAATACAACTATGTCCCCCGCAACAAAATTGCTACCTCTGAAGAAGGTGACATTATTGATCAACCCACCTATAAGCTCTCTTCCAACGACGACGACGACGATGACGACGATGATTGGAAATGGCACGAGGAGGAGACGGAGGAGGATGGCTCGGAGCATGGCCCCAACAAGTTGCACCGAAAGAGGAAGTTCAAGATCAAGTGGAGGCTCATGGTGGAGTGGGTCTTGTTCCTCAACATATTGACATGCTTGGTGTGTTCCTTGACCATATCTTCCATAACCAACATTCGTGTGTTGGGGTTGGAGATTTGGAGGTGGTGTTTGATGGCAATGGTCACATTCAGTGGTCGTTTGTTTTCAGGGTGGCTGGTTGGTCTGACGGTTTTCATCATCGAGCGAAACTTCATGCTAAGAGAGAAGGTCTTGTACTTCATCTACGGACTCAGAAAGAGCATAAGAAACTGTTTCTGGTTAGGCCTCGTGCTACTCTCCTACTGGAGCCTGGTATTCGACGATGTCCAAAAGAAGAACCACAAGTTCCTCAACAAGCTCTTCCAAGCCCTAGTGGCAGTGCTAGTGGGGGCCACCATTTGGCTCGTGAAGATCGTGCTGGTGAAGATGCTGGCATCGTCGTTTCACGTGACCACCTACTTCGACCGGATGAAGGAGAGCGTCTTCCACCACTACATCCTGGACACCCTCTCGGGTCCCCCGATGGAGGACGCCGAGGAGATCCTCCAGCAGCACCACCTCGCGGGGTCCAAGTCGATGCCCGCGAAGTGGAATGCAAAGAACCTCCACAAGTCGAAGAGGTTCGGCTCGAGGAGGATCGACATGGACAAGCTGAGGAAGCTCAGCTTGGAGAGCACCGCCTCGGCGTGGAGCGTGAAGAGGCTTGTGAACTACGTTAGGTCTTCGGGCCTGTCCACCATTTCCAGGACTGTGGATGATTTTGGCAACGCTGAGTCTGAGATTAGTAGTGAGTGGGAAGCTAGAAACTGTGCTCAGAGGATCTTCAAGAACGTTGCCAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCATGAGATTTTTGAAGAGGGTTGAGATACATACCATATTTCCACTCATTGAAGGAGCTCTTGAAACGGGACAGATCAGCAGGTCTTCATTTAGAAATTGGGTGATTCGAGCTTACTATGAACGAAAAGCTCTAGCACAATCACTGAATGATACCAAAACAGCAGTGCAGCAGCTCCACAAAATAGCAAGCGCAGTTGTTAGTGTGATAATAATCATTGTGATGCTTTTGCTGATGGAGGTGGCCACTCTCAAGATAATATTATTCTGTATTACACAAACGGTTCTGATAGGTGTTGCCTTCCAAGGCACTTGCAAGACTGTGTTGGAGGCCATCATCTTTGTCTTCGTCATGCACCCTTTTGACATTGGAGACCGCTGCGTCATTGATGGAGTTCACATGATTGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAAATATACTACCCTAATGCAGTTTTACTCACTAAGCCTATAAGCAATTTCTATAGGAGTCCAGAGATGTGGGATTCAATTGATTTCACCATTGATGTTTCAACTTCCATGGAGACCATCCTTGGACTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAACACAGTATGATAGCAAAAGGAATTGATAATGTGGACAAGCTAAAGTTGTGCTTATCTGTGCAACACACCATCAACCATCAGAACTACGGTGAGCGAAACGTTAGGATAACGGAGCTTCTCTTGGAACTGAAGAAGATCTTTGAGATCCATGGTGTCAAGTACCATCTACTTCCTCAGGAGATCCATATCACCCATATGAACATTGAACAAGGGAAAGTTCTGTTGCAATCATGA 2106 0.4644 MEKTRPSDQVVLFLDQHNNPKPPSMEPENHHQDKPKYPLKVRTLNRLSFSKPKSRILEYNYVPRNKIATSEEGDIIDQPTYKLSSNDDDDDDDDDWKWHEEETEEDGSEHGPNKLHRKRKFKIKWRLMVEWVLFLNILTCLVCSLTISSITNIRVLGLEIWRWCLMAMVTFSGRLFSGWLVGLTVFIIERNFMLREKVLYFIYGLRKSIRNCFWLGLVLLSYWSLVFDDVQKKNHKFLNKLFQALVAVLVGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILDTLSGPPMEDAEEILQQHHLAGSKSMPAKWNAKNLHKSKRFGSRRIDMDKLRKLSLESTASAWSVKRLVNYVRSSGLSTISRTVDDFGNAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLIEGALETGQISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAVVSVIIIIVMLLLMEVATLKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLTKPISNFYRSPEMWDSIDFTIDVSTSMETILGLKKSIQMYIESKPKYWNPKHSMIAKGIDNVDKLKLCLSVQHTINHQNYGERNVRITELLLELKKIFEIHGVKYHLLPQEIHITHMNIEQGKVLLQS 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02420 701 FunFam Predicted mechanosensitive ion channel 531 580 - -
Pumo4g02420 701 PIRSF Memb_At2g17000 15 698 IPR016688 -
Pumo4g02420 701 Pfam Mechanosensitive ion channel 472 677 IPR006685 GO:0016020|GO:0055085
Pumo4g02420 701 MobiDBLite consensus disorder prediction 1 38 - -
Pumo4g02420 701 MobiDBLite consensus disorder prediction 86 102 - -
Pumo4g02420 701 Gene3D - 531 580 IPR023408 -
Pumo4g02420 701 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 20 691 IPR016688 -
Pumo4g02420 701 MobiDBLite consensus disorder prediction 78 114 - -
Pumo4g02420 701 MobiDBLite consensus disorder prediction 24 38 - -
Pumo4g02420 701 SUPERFAMILY Sm-like ribonucleoproteins 522 580 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02420 Pumo-Chr4 38004269 38013681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02420 6 691 Mechanosensitive Ion Channel Family AT5G12080 42.817 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02420 K22048 - gmx:100813521 1224.92