Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02409 ATGATGGAGTCCGGCGAGAACGAGCGCGTGACGATTCGCGAGTTCTGCGCGAATGGAAGTTGCATGAAAGCGACGGAAGTTGAGGCCAAGCTTGATGAAGGAAACATTCAAGAAGCTGAATCGGCATTGCTCGAAGGGTTGTCACTAAATTCTGAGGAAGCAAGGGCTCTTCTTGGAAAGTTAGAGTATCAGAGAGGTAATGTCGAAGGTGCTCTTTGTGTGTTTGATGGAATTGATGTTCAAGCAGCCATACAGCGATTGCAAAGTTCCCTTGCTGAAAAATCACCTGCCAAGAAAGGTCCCACTCGCTCTGAATCACCTTCCTCAGTCTATCAGAATGCTGCTACTTTGGTGCTTGAAGCCATCTACTTGAAAGCCAAGTCTCTACAAAAACTGGACAAATTTACCGAAGCTGCAAATGAATGCAAGTGTGTTCTTGATGCTGTTGAGAAGATATTTAGTCAGGGTATACCTGATACACAAGTGGACAATAAATTGCAGGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAGGCCAGTTGCTATAATGAGGCATTGTCTGCTTATAGGAATGCCCTCCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAGGCATTTGCTGTGTTTTTGCTGTACAGTGGGGTGGAGGCAAGTCCACCCAGTTTAGCAGTTCAGATTGATGGGTCTTATGTACCCAAAAATAATCTGGAAGAGGCAATTCTGCTTCTAATGATTCTGTTGAGAAAGTTTAGCCTTGGTAAGATAAAGTGGGATCCTTCAATTATGGAACACCTGACTTTTGCACTTTCAGCATGTGGTCAAACTTCTATTTTAGCAAAGCAATTTGAGGAGTTGACGCCTGGTGTATATCACCGTATTGACCGTTGGAATTTTTTAGCTCTATGTAATAGTGGAGCTGGAGAAAATAAAAGTGCTTTGAATCTGCTAAGGATGTCTTTGCATAAACATGAACGACCAGATGACCTGATATCATTATTATTGGCTGCCAAAATTTGCAGTGAGGATCCTCATCTTGCTGCTGAGGGAGCAGGATATGCACAGAGAGCAATCAACAATGCTCAGGGCTTAGATGAGCATTTGAAAGGTGTGGGTCTTCGGATGTTGGGACTTTGCCTGGGAAAGCAAGCTAAGGTTTCTTCTTCTGACTTTGAGAGGTCTATGCTTCAATCCAAAGCTCTGCAATCATTGGAGGAGGCAGTTAGACTGGAGCAAAACAATTCTGATCTAATTTTTGAACTGGCTATTCAGTATGCCGAGCACCGAAATTTAACTGCTGCTTTATCCTGTGCCAAGCAGTTCTTTGACAGAACTGGTGGCTCTAAATTGCAAGGTTGGAGATTGCTTGCTCTAGTTTTGTCTGCCCAAAAAAGATTTTCAGAGGCCGAAGTGGTGACTGATGCTGCTTTAGACGAGACTGCAAAATGGGAGCAGGGGCCACTACTCAGGCTGAAAGCCAAGCTGAAGATCTCCCAATTACGACCCATGGATGCTATTGAAATTTACCGGTACCTTCTTGCATTGGTTCAAGCCCAAAGGAAATCATCTGGGCCTCTCAAACTTAGTTCACAGGTTGAGGATTATAAGCTAAATGAATTTGAAGTTTGGCATGGTCTGGCAAATTTATATTCAAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGAGAGTTAAAGGAATACTCAGCAGCAACAATACACACCGAAGGTATTATGTTTGACGGTCGTGGAGAAAATCAAGAAGCTCTTATTGCTACTTTCAATGCTGTCCTATTCGAACCGAACTACGTGCCAAGCAAGATCTTGATGGCATCTTTGATACTTAAGATGGGTTTTATAGCCTCGCCTGTTGCGAGAAGCTTACTTTCTGATGCACTTAGAATAGAACCCACTAACCGCATGGCTTGGTATTACTTGGGATTAACACACAAGGCTGACGGCCGAATAGTTGATGCTGCAGATTGCTTCCAGGCAGCTTCCATGCTTGAAGAATCCGATCCCATCGAAAATTTCAGCTGTATGCTTTGA 2088 0.4358 MMESGENERVTIREFCANGSCMKATEVEAKLDEGNIQEAESALLEGLSLNSEEARALLGKLEYQRGNVEGALCVFDGIDVQAAIQRLQSSLAEKSPAKKGPTRSESPSSVYQNAATLVLEAIYLKAKSLQKLDKFTEAANECKCVLDAVEKIFSQGIPDTQVDNKLQEIVSHAVELLPELWKQASCYNEALSAYRNALLSQWNLDNDCCARIQKAFAVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILLRKFSLGKIKWDPSIMEHLTFALSACGQTSILAKQFEELTPGVYHRIDRWNFLALCNSGAGENKSALNLLRMSLHKHERPDDLISLLLAAKICSEDPHLAAEGAGYAQRAINNAQGLDEHLKGVGLRMLGLCLGKQAKVSSSDFERSMLQSKALQSLEEAVRLEQNNSDLIFELAIQYAEHRNLTAALSCAKQFFDRTGGSKLQGWRLLALVLSAQKRFSEAEVVTDAALDETAKWEQGPLLRLKAKLKISQLRPMDAIEIYRYLLALVQAQRKSSGPLKLSSQVEDYKLNEFEVWHGLANLYSSLSHWKDAEICLQKARELKEYSAATIHTEGIMFDGRGENQEALIATFNAVLFEPNYVPSKILMASLILKMGFIASPVARSLLSDALRIEPTNRMAWYYLGLTHKADGRIVDAADCFQAASMLEESDPIENFSCML 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02409 695 SUPERFAMILY TPR-like 541 679 IPR011990 GO:0005515
Pumo4g02409 695 Gene3D Tetratricopeptide repeat domain 27 533 IPR011990 GO:0005515
Pumo4g02409 695 Gene3D Tetratricopeptide repeat domain 534 689 IPR011990 GO:0005515
Pumo4g02409 695 SUPERFAMILY TPR-like 31 479 IPR011990 GO:0005515
Pumo4g02409 695 SUPERFAMILY TPR-like 119 445 IPR011990 GO:0005515
Pumo4g02409 695 SMART tpr_5 549 582 IPR019734 GO:0005515
Pumo4g02409 695 SMART tpr_5 583 616 IPR019734 GO:0005515
Pumo4g02409 695 SMART tpr_5 459 492 IPR019734 GO:0005515
Pumo4g02409 695 SMART tpr_5 303 336 IPR019734 GO:0005515
Pumo4g02409 695 SMART tpr_5 119 152 IPR019734 GO:0005515
Pumo4g02409 695 SMART tpr_5 653 686 IPR019734 GO:0005515
Pumo4g02409 695 PANTHER PROTEIN NPG1 6 692 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02409 Pumo-Chr4 37476874 37483786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02409 3 695 Calmodulin-binding Proteins AT2G43040 72.557 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02409 K21843 - gmx:100811897 1259.2