Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02404 ATGATCTTGGCACTCATTTGGCACCACCAGCTAACCCAATATTTCTACAAGACCCTTTCCCCAATGAAGCATCCATCAAAGCCATGGAGGCCATTAACCACAAACTGTTGCACAATTGAGGACCAAACTATCTTTGGCAATATCAGTAGCTGCAAGCACTCAAATTCAGATATGTCCAATGATATTGCACAATTACCTAACTCATTTCATTTGCTGTCTTTCTCTGATCTTAGTCATTTTTCGTCCATAACATCATCAAATGAAGATCAAATTGCACAGTCTTTTGCTTCGGATTTATATGATTTTCAGCTCAGTGAGCTGCGTGCCATTACTCAGAATTTTTCAAGCAATTTCTTGCTGGGTGAAGGAGGGTTTGGAGCAGTTCATAAGGGTTATATAGATGCTAACTTGAGACTGGGTTTGAAGGCTCAACCTGTTGCTGTTAAGATTCTCAACGTTGAAGGTTTACAAGGACACCGTGAGTGGCTTGCAGAGGTGATATTACTTGGGCAGCTGAGACACCAAAATTTGGTCAAGTTGATTGGATATTGTTACGAGGATGAAGAAAGGCTACTTATCTACGAATTCATGCCAAGGGGAAGCTTGGAGAATCACTTGTTCAGAAGAAAAACATCACTGCCATGGACAACAAGATTAAAAATTACAATAGGTGCAGCTAAAGGTCTTGCCTTCTTGCATGGAACTAAGAATCCAGTCATTTACCGAGACTTCAAGACTTCCAATATTTTACTTGATTCAGATTTCACAGCCAAACTTTCAGATTTTGGACTTGCAAAAATGGTGCCAGAGGGATCAAAGTCACATGTTACAACCAGAGTTTGGGGTACCTATGGCTACGCAGCCCCAGAATACATCTCCACAGGGCACTTGACAACAAAAAGTGATGTCTACAGCTTTGGGGTAGTCCTGTTAGAACTGCTTACAGGAAGGAGAGCAATGGACAAGAAAAGACCAAAGACTGAGCAAAGCCTTGTGGATTGGTCAAAGCCTTACTTGAGCAATAGCAAGAGGTTGAGGTGCATTATGGATCCAAGGCTTGGTGGCCAATATTCTATCAAGGGTGCAAAGGAGATGGCCCTTTTGGCATTGCAGTGCACAAGTTTGAATCCCAAAGACAGGCCAAGGATGCAAACTGCTGTTGAAACTCTTGAAAACTTGCAACAGTTCAAGGACATGGCAGTGGCATATGGACACTGGCCACAATGTGCTAGAAATGGAGCATCCAATAATAAGGTGAAAATTGATGTTAGAGCTGGTGCTAACCACAAGAGGCTTTCTCCTCTAGTCTCAAACATAACTTGA 1323 0.4218 MILALIWHHQLTQYFYKTLSPMKHPSKPWRPLTTNCCTIEDQTIFGNISSCKHSNSDMSNDIAQLPNSFHLLSFSDLSHFSSITSSNEDQIAQSFASDLYDFQLSELRAITQNFSSNFLLGEGGFGAVHKGYIDANLRLGLKAQPVAVKILNVEGLQGHREWLAEVILLGQLRHQNLVKLIGYCYEDEERLLIYEFMPRGSLENHLFRRKTSLPWTTRLKITIGAAKGLAFLHGTKNPVIYRDFKTSNILLDSDFTAKLSDFGLAKMVPEGSKSHVTTRVWGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRAMDKKRPKTEQSLVDWSKPYLSNSKRLRCIMDPRLGGQYSIKGAKEMALLALQCTSLNPKDRPRMQTAVETLENLQQFKDMAVAYGHWPQCARNGASNNKVKIDVRAGANHKRLSPLVSNIT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02404 440 Gene3D Phosphorylase Kinase; domain 1 76 196 - -
Pumo4g02404 440 ProSitePatterns Protein kinases ATP-binding region signature. 120 149 IPR017441 GO:0005524
Pumo4g02404 440 CDD STKc_IRAK 120 393 - -
Pumo4g02404 440 Gene3D Transferase(Phosphotransferase) domain 1 197 405 - -
Pumo4g02404 440 PANTHER OS01G0588500 PROTEIN-RELATED 81 394 - -
Pumo4g02404 440 ProSiteProfiles Protein kinase domain profile. 114 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02404 440 FunFam Serine/threonine-protein kinase BIK1 81 196 - -
Pumo4g02404 440 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 197 402 - -
Pumo4g02404 440 Pfam Protein tyrosine and serine/threonine kinase 120 390 IPR001245 GO:0004672|GO:0006468
Pumo4g02404 440 SUPERFAMILY Protein kinase-like (PK-like) 90 391 IPR011009 -
Pumo4g02404 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02404 Pumo-Chr4 37410017 37415074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02404 85 427 Glycoside Hydrolase AT3G07070 45.584 8.66e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo4g02404 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02404 - - gmx:100804970 733.406