Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02400 ATGGACAGTGGTGACACAGGTCTGTTCCATGGTAACGTGGGCACCATACTAATTGCCATGGGTTCAGCCAGTTTCGTGGTCACAATATTCCATCTCATAATCCTCTGTCGCACCCACCGCCACGTCACCAACCAAAATTCACAACAAGAAGAAGCACGGTCCGCACCAGAGAACACTTCGGTGCTGCCGCACCTGATTCCAGCCCACAAGTATGAAAAGAAGAAGAAGAAGAAAAACGATGATGCTGACGTGGCGGACGGCGACGAAGATGACACGTGTGCTGTGTGCCTGGGAGAGTTTGAAGAGGGTGAAGAGCTGAGGACGTTGCCGGAGTGCATGCACTCTTTCCACGTGGCGTGCATAGACATGTGGCTCCATTCCCATTCCAGCTGTCCCGTTTGCCGCGCTCACGCCACGCCTTCGCCGGCGGTGGAGCAGCGGTTGCCGGAGCTTGGTTCCGGTGGTGCGATGAATGCACGTCACCACACCATAGATATGGTGCAAATAGCTCTCGTTCAGAATGGGTTGGCAATACGGTGA 540 0.5444 MDSGDTGLFHGNVGTILIAMGSASFVVTIFHLIILCRTHRHVTNQNSQQEEARSAPENTSVLPHLIPAHKYEKKKKKKNDDADVADGDEDDTCAVCLGEFEEGEELRTLPECMHSFHVACIDMWLHSHSSCPVCRAHATPSPAVEQRLPELGSGGAMNARHHTIDMVQIALVQNGLAIR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02400 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 140 IPR013083 -
Pumo4g02400 179 SMART ring_2 93 134 IPR001841 -
Pumo4g02400 179 MobiDBLite consensus disorder prediction 45 87 - -
Pumo4g02400 179 Pfam Ring finger domain 91 135 IPR001841 -
Pumo4g02400 179 SUPERFAMILY RING/U-box 87 141 - -
Pumo4g02400 179 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 139 IPR044675 -
Pumo4g02400 179 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02400 Pumo-Chr4 37315028 37315567 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02400 17 171 C3H Transcription Factor Family AT5G17600 32.759 3.80e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02400 - - gmx:100809606 211.846