Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02397 ATGATGGAGTCCGGCGAGAACGAGCGCGTGACGATTCGCGAGTTCTGCGCGAATGGAAGTTGCATGAAAGCGACGGAAGTTGAGGCCAAGCTTGATGAAGGAAACATTCAAGAAGCTGAATCGGCATTGCTCGAAGGGTTGTCACTAAATTCTGAGGAAGCAAGGGCTCTTCTTGGAAAGTTAGAGTATCAGAGAGGTAATGTCGAAGGTGCTCTTTGTGTGTTTGATGGAATTGATGTTCAAGCAGCCATACAGCGATTGCAAAGTTCCCTTGCTGAAAAATCACCTGCCAAAAAAGGTCCCACTCGCTCTGAATCACCTTCCTCAGTCTATCAGAATGCTGCTACTTTGGTGCTTGAAGCCATCTACTTGAAAGCCAAGTCTCTACAAAAACTGGACAAATTTACCGAAGCTGCAAATGAATGCAAGCGTGTTCTTGATGCTGTTGAGAAGATATTTAGTCAGGGTATACCTGATACACAAGTGGACAATAAATTGCAGGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAGGCCAGTTGCTATAATGAGGCATTGTCTGCTTATAGGAATGCCCTCCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAGGCATTTGCTGTGTTTTTGCTGTACAGTGGGGTGGAGGCAAGTCCACCCAGTTTAGCAGTTCAGATTGATGGGTCTTATGTACCCAAAAATAATCTGGAAGAGGCAATTCTGCTTCTAATGATTCTGTTGAGAAAGTTTAGCCTTGGTAAGATAAAGTGGGATCCTTCAATTATGGAACACCTGACTTTCGCACTTTCAGCATGTGGTCAAACTTCTATTTTAGCAAAGCAATTTGAGGAGTTGACGCCTGGTGTATATCACCGTATTGACCGTTGGAATTTTTTAGCTCTATGTAATAGTGGAGCTGGAGAAAATAAAAGTGCTTTGAATCTGCTAAGGATGTCTTTGCATAAACATGAACGACCAGATGACCTGATATCATTATTATTGGCTGCCAAAATTTGCAGTGAGGATCCTCATCTTGCTGCTGAGGGAGCAGGATATGCACAGAGAGCAATCAACAATGCTCAGGGCTTAGATGAGCATTTGAAAGGTGTGGGTCTTCGGATGTTGGGACTTTGCCTGGGAAAGCAAGCTAAGGTTTCTTCTTCTGACTTTGAGAGGTCTATGCTTCAATCCAAAGCTCTGCAATCATTGGAGGAGGCAGTTAGACTGGAGCAAAACAATTCTGATCTAATTTTTGAACTGGCTATTCAGTATGCCGAGCACCGAAATTTAACTGCTGCTTTATCCTGTGCCAAGCAGTTCTTTGACAGAACTGGTGGCTCTAAATTGCAAGGTTGGAGATTGCTTGCTCTAGTTTTGTCTGCCCAAAAAAGATTTTCAGAGGCCGAAGTGGTGACTGATGCTGCTTTAGACGAGACTGCAAAATGGGAGCAGGGGCCACTACTCAGGCTGAAAGCCAAGCTGAAGATCTCCCAATTACGACCCATGGATGCTATTGAAATTTACCGGTACCTTCTTGCATTGGTTCAAGCCCAAAGGAAATCATCTGGGCCTCTCAAACTTAGTTCACAGGTTGAGGATTATAAGCTAAATGAATTTGAAGTTTGGCATGGTCTGGCAAATTTATATTCAAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGAGAGTTAAAGGAATACTCAGCAGCAACAATACACACCGAAGGTATTATGTTTGACGGTCGTGGAGAAAATCAAGAAGCTCTTATTGCTACTTTCAATGCTGTCCTATTCGAACCGAACTACGTGCCAAGCAAGATCTTGATGGCATCTTTGATACTTAAGATGGGTTTTATAGCCTCGCCTGTTGCGAGAAGCTTACTTTCTGATGCACTTAGAATAGAACCCACTAACCGCATGGCTTGGTATTACTTGGGATTAACACACAAGGCTGACGGCCGAATAGTTGATGCTGCAGATTGCTTCCAGGCAGCTTCCATGCTTGAAGAATCCGATCCCATCGAAAATTTCAGCTGTATGCTTTGA 2088 0.4363 MMESGENERVTIREFCANGSCMKATEVEAKLDEGNIQEAESALLEGLSLNSEEARALLGKLEYQRGNVEGALCVFDGIDVQAAIQRLQSSLAEKSPAKKGPTRSESPSSVYQNAATLVLEAIYLKAKSLQKLDKFTEAANECKRVLDAVEKIFSQGIPDTQVDNKLQEIVSHAVELLPELWKQASCYNEALSAYRNALLSQWNLDNDCCARIQKAFAVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILLRKFSLGKIKWDPSIMEHLTFALSACGQTSILAKQFEELTPGVYHRIDRWNFLALCNSGAGENKSALNLLRMSLHKHERPDDLISLLLAAKICSEDPHLAAEGAGYAQRAINNAQGLDEHLKGVGLRMLGLCLGKQAKVSSSDFERSMLQSKALQSLEEAVRLEQNNSDLIFELAIQYAEHRNLTAALSCAKQFFDRTGGSKLQGWRLLALVLSAQKRFSEAEVVTDAALDETAKWEQGPLLRLKAKLKISQLRPMDAIEIYRYLLALVQAQRKSSGPLKLSSQVEDYKLNEFEVWHGLANLYSSLSHWKDAEICLQKARELKEYSAATIHTEGIMFDGRGENQEALIATFNAVLFEPNYVPSKILMASLILKMGFIASPVARSLLSDALRIEPTNRMAWYYLGLTHKADGRIVDAADCFQAASMLEESDPIENFSCML 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02397 695 Gene3D Tetratricopeptide repeat domain 238 529 IPR011990 GO:0005515
Pumo4g02397 695 SUPERFAMILY TPR-like 416 520 IPR011990 GO:0005515
Pumo4g02397 695 SMART tpr_5 549 582 IPR019734 GO:0005515
Pumo4g02397 695 SMART tpr_5 583 616 IPR019734 GO:0005515
Pumo4g02397 695 SMART tpr_5 459 492 IPR019734 GO:0005515
Pumo4g02397 695 SMART tpr_5 119 152 IPR019734 GO:0005515
Pumo4g02397 695 SMART tpr_5 303 336 IPR019734 GO:0005515
Pumo4g02397 695 SMART tpr_5 653 686 IPR019734 GO:0005515
Pumo4g02397 695 SUPERFAMILY TPR-like 543 679 IPR011990 GO:0005515
Pumo4g02397 695 Gene3D Tetratricopeptide repeat domain 530 690 IPR011990 GO:0005515
Pumo4g02397 695 PANTHER PROTEIN NPG1 6 692 IPR043376 -
Pumo4g02397 695 Pfam Tetratricopeptide repeat 429 485 - -
Pumo4g02397 695 Gene3D Tetratricopeptide repeat domain 24 206 IPR011990 GO:0005515
Pumo4g02397 695 SUPERFAMILY TPR-like 119 445 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02397 Pumo-Chr4 37095035 37101941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02397 3 695 Calmodulin-binding Proteins AT2G43040 72.557 0.0 990
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02397 K21843 - gmx:100811897 1262.28