Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02393 ATGGACGCATTATTTCTGTATCACACTCTTCTATATATGGACAGTGGTGACACAGGTCTGTTCCATGGCAACGTGGGCACCATACTAATTGCCATGGGTTCAGCCAGTTTCGTGGTCACAATATTCCATCTCATAATCCTCTGTCGCACCCACCGCCACGTCACCAACCAAAATTCACAAGAAGAAGAAGCACGGTCCGCACCAGAGAACACTTCGGTGCTGCCGCACCTGATTCCAGCCCACAAGTATGAAAAGAAGAAGAAGAAAAACGATGATGCTGACGTGGCGGACGGCGACGAAGATGACACGTGTGCTGTGTGCCTGGGAGAGTTTGAAGAGGGTGAAGAGCTGAGGACGTTGCCGGAGTGCATGCACTCTTTCCACGTGGCGTGCATAGACATGTGGCTCCATTCCCATTCCAGCTGTCCCGTTTGCCGCGCTCACGCCACGCCTTCGCCGGCGGTGGAGCAGCGGTTCCCGGAGCTTGGTTCCGGTGGTGCGATGAATGCACGTCACCACACCATAGATATGGTGCAAATAGCTCTCGTTCAGAATGGGTTGGCAATACGGTGA 573 0.534 MDALFLYHTLLYMDSGDTGLFHGNVGTILIAMGSASFVVTIFHLIILCRTHRHVTNQNSQEEEARSAPENTSVLPHLIPAHKYEKKKKKNDDADVADGDEDDTCAVCLGEFEEGEELRTLPECMHSFHVACIDMWLHSHSSCPVCRAHATPSPAVEQRFPELGSGGAMNARHHTIDMVQIALVQNGLAIR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02393 190 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 27 150 IPR044675 -
Pumo4g02393 190 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Pumo4g02393 190 Pfam Ring finger domain 102 146 IPR001841 -
Pumo4g02393 190 SMART ring_2 104 145 IPR001841 -
Pumo4g02393 190 SUPERFAMILY RING/U-box 98 152 - -
Pumo4g02393 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02393 Pumo-Chr4 37009753 37010325 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02393 17 146 C3H Transcription Factor Family AT1G20823 36.029 8.23e-20 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02393 - - gmx:100809606 211.075