Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02381 ATGGGTTCTAATGGTAGCAAAGCCACTTATTCCTCTTGCAGTAGTTCTTCATCGTCTTCTTCGGGGAGTTTAAGGAAGGGTCGATCTAAGGGCCTTAGAGTTTTTCAATCTTATTGTCTTGGAACAACTTCTGGTTCTCACGACAGTGATAATGAAGACCAGGTATGTGATCAGAATAAAGTAAATGGCAGTGATGTTACATATGCTGATGGCAATGGAACAGACTCGGATGAGGTGAAAACAGAGTCATGTAGAAAGGTTAAAGCTGGTGAAATGACTTGTATGCCTTCTAACATTGACCTTGATGGATGGGGTGAAACAAGCATCCCCAACAATTCATCCAGAACTGGTAGCAGCTCTATCCATTCTTCTTCAACTCATTCCTTAAACCCTTCAAGTCATTTCCTTTCCCAGTTTAGCCTCATTCCTGGTAACGTAAGCTTCAGACTTAGCAGAAGCACCAGTTTGGGGTCATCAAGGCCTTGTCCTGTTTCTTCTGCAAGTCTCTCAATATTTGACAATGAAGATGAGCATAATCTCCATCCTGGATCTCCTGGAAGCTTGATTAATAGAAGTGAAACACAACAATGTAGTAACTTGCTTCCTGCATCTTTTTTCAATCAAATACATGCACAGTGTCATGAAGATGCTTCTAATAATTCAAGGTCAAATGTCCCAACATCAGGTGTACTTGGAAACTTGCAGCGCGATCCTACAGATGGAGTACGTACAAGAGAAGGGCCAGATGTGAACTTATTCTCTCCAAGAATTCAAACAGATACAGAAAATGTTGACACTAGACATATTGATCGACAAAATGGTGCTAGAGAACCAGTTGAACGGAATGTTCGTTTCAGCCGAACTTTAAGTGTGGGAAGGCTTCGTGACAGAGTTCTTCGTCGATCAACATTATCTGATCTCCCCCTTTTCCCTTTGCAACAAGAGAGAGAACTGAGAGATGCTAGCCTGACTAGCCAGGATATTGACAGGCAAGCAGTAGAGGGAGATTCAAGAGTATTACCATCTGATCATAGTACTATTAATTCTTCAACATCTAGATATCCTCCATCTAGTATGTCTAACTCCATGTTTAGCGTCCAAGACTATGAGGTTGAGACTTCACGATTGAGAGAAGGTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGCAGAAGAAGAATACGGTCCCAGGTTCGCGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGATAGATCGTGTATCTTGTCTGGTCAGCATAGAAATGGTCGTTGTACATGCCGAATCAATAATAACCGTGACACTAATTCAAATGATGACACTGGTGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCCGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCGATTCGTTGCCTGTCAAGTTATATGAGAAGTTGCATAAGCATCAAGAGGATGCTGCACAATGCTATGTATGCCTTGTTGAGTATGAAGACGGAGACAACATGCGAGTACTGCCGTGTCATCATGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTTTGTAGAGGGGACATATGCATATCTGATTCAACGCCAACAGAGAACTCGAGTGGCTAG 1734 0.4233 MGSNGSKATYSSCSSSSSSSSGSLRKGRSKGLRVFQSYCLGTTSGSHDSDNEDQVCDQNKVNGSDVTYADGNGTDSDEVKTESCRKVKAGEMTCMPSNIDLDGWGETSIPNNSSRTGSSSIHSSSTHSLNPSSHFLSQFSLIPGNVSFRLSRSTSLGSSRPCPVSSASLSIFDNEDEHNLHPGSPGSLINRSETQQCSNLLPASFFNQIHAQCHEDASNNSRSNVPTSGVLGNLQRDPTDGVRTREGPDVNLFSPRIQTDTENVDTRHIDRQNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDLPLFPLQQERELRDASLTSQDIDRQAVEGDSRVLPSDHSTINSSTSRYPPSSMSNSMFSVQDYEVETSRLREGRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRINNNRDTNSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNDVVDSLPVKLYEKLHKHQEDAAQCYVCLVEYEDGDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGDICISDSTPTENSSG 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02381 577 MobiDBLite consensus disorder prediction 42 81 - -
Pumo4g02381 577 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 573 - -
Pumo4g02381 577 SUPERFAMILY RING/U-box 497 568 - -
Pumo4g02381 577 MobiDBLite consensus disorder prediction 101 127 - -
Pumo4g02381 577 MobiDBLite consensus disorder prediction 341 361 - -
Pumo4g02381 577 MobiDBLite consensus disorder prediction 104 127 - -
Pumo4g02381 577 SMART ring_2 519 560 IPR001841 -
Pumo4g02381 577 Pfam Ring finger domain 518 561 IPR001841 -
Pumo4g02381 577 MobiDBLite consensus disorder prediction 323 361 - -
Pumo4g02381 577 MobiDBLite consensus disorder prediction 56 71 - -
Pumo4g02381 577 ProSiteProfiles Zinc finger RING-type profile. 519 561 IPR001841 -
Pumo4g02381 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 565 IPR013083 -
Pumo4g02381 577 MobiDBLite consensus disorder prediction 1 26 - -
Pumo4g02381 577 FunFam Putative RING zinc finger domain superfamily protein 488 566 - -
Pumo4g02381 577 MobiDBLite consensus disorder prediction 217 234 - -
Pumo4g02381 577 MobiDBLite consensus disorder prediction 217 254 - -
Pumo4g02381 577 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02381 Pumo-Chr4 36763927 36770227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02381 220 568 C3H Transcription Factor Family AT5G45290 60.563 1.64e-121 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02381 - - gmx:100800896 965.296