Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02379 ATGGCTCCTAAAGTTGATAGTTCCAAGAAGGGAAGTAGGAACCTCAAGTACCCTCACATTAGTGTGCCGCTGAGGAACAAGCTTGACCATTATCAGATCCTGAAATACCCTCTCACCACTGAATCTGCTACGAAGAAGATTGAGGACAACAACACTTTGGTTTTCATTGATGACCTGCATGCCAACAAGAAGAAGATCAAGGATACGGTGAAGAAAATGTATAACATCCAGACCAAGAAATTTAACACCTTGATCAGGCTTGATGGCACCAAGAAGGACTATGTCAGGTTGACCCTAGATCATGATGCAGTGGATGTGACAAACAAGATCGGGATTTATTAA 342 0.424 MAPKVDSSKKGSRNLKYPHISVPLRNKLDHYQILKYPLTTESATKKIEDNNTLVFIDDLHANKKKIKDTVKKMYNIQTKKFNTLIRLDGTKKDYVRLTLDHDAVDVTNKIGIY 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02379 113 FunFam 60S ribosomal protein L23a 2 113 - -
Pumo4g02379 113 Gene3D - 3 113 IPR012677 -
Pumo4g02379 113 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 30 105 IPR012678 GO:0003735|GO:0005840|GO:0006412
Pumo4g02379 113 Hamap 50S ribosomal protein L23 [rplW]. 33 113 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pumo4g02379 113 PANTHER 60S RIBOSOMAL PROTEIN L23A 10 112 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pumo4g02379 113 Pfam Ribosomal protein L23 33 92 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02379 Pumo-Chr4 36712817 36713274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02379 13 112 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 80.000 7.08e-43 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02379 K02893 - zju:107413543 165.622