Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02338 ATGGACAATGCTCAAGTTTTAAGTAAAACCGAAGGCGAATATGCATCAGATGTGAAGAGCAAAGCTGAAGAAGTTCCGCAGTGTGATAAGGGCATCGAGAATGATGCTAATGTTTGTCAAAGCAATGCTGATACTGCTGAAACGACCGTGGAGGTGAAGCCCAGAGCCTTTGAAGTGGCTGATGGTAAAACTTGCAATAATGGTGACTCCAACTCCTTACCCTCTAGTCATAATGAGCCTAACACACCACGTGCCGTTCCTGCTGACGTAAGAGCTGAAATCAAGAGTGGATTAAACAATGAGAATAAGGATAATGAAAAGCAGGCTGCTGTTGCACATGCAGATAATGGAAATTCGATCTCAAAGAACTTGTACTTTTTGGATCCTGATGATTCATATGATGGTAATGAGTCAGGAACAGAAGAGGAGCAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTCTATAAAGAGGAGCTTAATTGCCTTAAGTTATGGAGATCTGTAAACAGATTGGGCGGCTATGACAAGGTTACCTCATGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCACTTCTTGACTATGAAAGGCATACAACAAAAGGTGATGAGCTGATTGTGCCTATTACTCCTCATTCAGAGCCAATAAATATTGAAAATCAGTGTGTCCAGGGTTCAGCATCTGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTGGCAATGGTGAAGTTAGTGATCCTATTATTAAGGATAGGAATTCTCTGTCTATGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATGTACTTAAACGCAAGAAATCATCAGACACGGTTAATGCAGCCAAAGTGGCACATAGTAAACCATCTAAACCACAATTGGACACATCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTAATAAGCCGAGTTATGTTTTTTCTCAGTAATAATTCTGCACTTATGTTGAAATTTTGGTGTATAATTTTCACTGTTTCATGGTAA 1209 0.4152 MDNAQVLSKTEGEYASDVKSKAEEVPQCDKGIENDANVCQSNADTAETTVEVKPRAFEVADGKTCNNGDSNSLPSSHNEPNTPRAVPADVRAEIKSGLNNENKDNEKQAAVAHADNGNSISKNLYFLDPDDSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYKEELNCLKLWRSVNRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHTTKGDELIVPITPHSEPINIENQCVQGSASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSLSMQKREKQLRSINVLKRKKSSDTVNAAKVAHSKPSKPQLDTSVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVISRVMFFLSNNSALMLKFWCIIFTVSW 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02338 402 MobiDBLite consensus disorder prediction 64 82 - -
Pumo4g02338 402 FunFam AT-rich interactive domain-containing protein 3 141 240 - -
Pumo4g02338 402 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 41 375 IPR045147 GO:0006357
Pumo4g02338 402 MobiDBLite consensus disorder prediction 1 34 - -
Pumo4g02338 402 Pfam ARID/BRIGHT DNA binding domain 144 228 IPR001606 GO:0003677
Pumo4g02338 402 MobiDBLite consensus disorder prediction 14 30 - -
Pumo4g02338 402 MobiDBLite consensus disorder prediction 57 85 - -
Pumo4g02338 402 Gene3D - 141 238 IPR036431 GO:0003677
Pumo4g02338 402 SMART bright_3 142 233 IPR001606 GO:0003677
Pumo4g02338 402 CDD ARID 143 228 - -
Pumo4g02338 402 SMART ARID_2 138 228 - -
Pumo4g02338 402 ProSiteProfiles ARID domain profile. 141 232 IPR001606 GO:0003677
Pumo4g02338 402 SUPERFAMILY ARID-like 136 245 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02338 Pumo-Chr4 35687887 35694065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02338 125 375 ARID Transcription Factor Family AT1G76510 56.917 2.64e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pumo4g02338 ARID 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02338 - - gmx:100803374 658.292