Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02321 ATGACACGCGGGCTGAGACTCCTCCAATCCGCGGCGGCGCCACCGCCGGAGGCGGCCGTGGCCGTCGAGTCTGACTTCGTGGTGATCCTAGCGGCCCTCCTCTGCGCCCTCATATGCGTGGTTGGCCTCATCGCCATCGCGCGCTGCGCGTGGCTCCGCCGGGGACCGGTGGCCGGCGCCGGCACCGGAGCCGCGCCGGCGACGGCGAACAAGGGCCTCAAGAAGAAGGTGATGAACTCGCTGCCGAGGTTCACGTACGCCGGCGACGGCGACCGGTGCAAGTGGTCGGAGTGCGCGATTTGCCTGACGGAATTCGCCGGCGGCGACGAGGTCCGGGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTGGCGTGCGTGGACACGTGGCTCGCGTCGCACTCCTCGTGCCCCTCGTGCCGCGCACCCTTCGCCGTCGTCGCGCGCTGCCAGAAGTGCGGCCACTTTCCGGCAATGGCCGCCGCCGCCTCCGCCGCTTCGGAGACCAAGTCCGTTGGTGGCGACAATGCGGATAGCGCTTCCAATGCTAATCGTAATGTTATTATTACGAATGGGTTTAGTAATTACGGTTTCTTGCCTTAA 600 0.6683 MTRGLRLLQSAAAPPPEAAVAVESDFVVILAALLCALICVVGLIAIARCAWLRRGPVAGAGTGAAPATANKGLKKKVMNSLPRFTYAGDGDRCKWSECAICLTEFAGGDEVRVLPQCGHGFHVACVDTWLASHSSCPSCRAPFAVVARCQKCGHFPAMAAAASAASETKSVGGDNADSASNANRNVIITNGFSNYGFLP 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02321 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 145 IPR013083 -
Pumo4g02321 199 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Pumo4g02321 199 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 14 153 - -
Pumo4g02321 199 Pfam Ring finger domain 97 140 IPR001841 -
Pumo4g02321 199 SMART ring_2 98 139 IPR001841 -
Pumo4g02321 199 CDD RING-H2_EL5-like 97 140 - -
Pumo4g02321 199 SUPERFAMILY RING/U-box 83 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02321 Pumo-Chr4 35372817 35374014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02321 1 152 C3H Transcription Factor Family AT1G76410 61.392 6.97e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02321 - - gmx:100813341 327.791