Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02316 ATGGGGATTAGCAAATGCCTTCTTGAAAATATGTCTTCTTTGGGTAATAATGCTACTAGTGGTGGCAGTTCAGGTTGGCAAGCACCAGAACAACTTGTTCAAGGACGTCAAACACGGGCAGTAGATATATTTAGTTTAGGTTGTGTCCTATTTTTCTGCATTACTGGGGGAAGACATCCATTTGGAGAACGTATTGAACGGGATATCAATATTTTGAAAAATCAAATGGATCTTTTCTTAGTGGAGTTCATTCCTGAAGCCAAAGATCTTATTAGTTGTTTATTAAACCCTAACCCTGATCTAAGGCCAAAGGCAACTGAAGTATTGTACCATCCTTTTTTCTGGAGTTCTGAGATGAGACTTTCCTTTTTACGTGACACCAGTGACAGGGTGGAACTGGAAAATAGAGAGACTAATTCTGATCTTTTGGTGACATTAGAAAGCATTGCCACAGTGGCCTTGGGTGGAAAATGGGATGAAAGGATGGAACCAGCTTTCATTGCTGACATCGGTTATTACCGGCGGTATAATTTTAACAGTGTTCGAGACTTGTTGCGAGTTATGAGAAACAAACTAAATCATTATAGAGAATCGCCTCAAGAAATCCAGGAACTTGTAGGACCTGTGCCCGAAGGATTCTACAACTACTTTGCAAGTCGATACCCAAGACTCTTGATTGAAGTGTATAAAGTTATACTCCAATATTGCAAGGAGGAAGAATGCTTCCAAAGATATTTTAAAAATGTTGATTAG 753 0.3918 MGISKCLLENMSSLGNNATSGGSSGWQAPEQLVQGRQTRAVDIFSLGCVLFFCITGGRHPFGERIERDINILKNQMDLFLVEFIPEAKDLISCLLNPNPDLRPKATEVLYHPFFWSSEMRLSFLRDTSDRVELENRETNSDLLVTLESIATVALGGKWDERMEPAFIADIGYYRRYNFNSVRDLLRVMRNKLNHYRESPQEIQELVGPVPEGFYNYFASRYPRLLIEVYKVILQYCKEEECFQRYFKNVD 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02316 250 Pfam Ribonuclease 2-5A 120 246 IPR010513 GO:0004540|GO:0006397
Pumo4g02316 250 PANTHER IRE1-RELATED 1 248 IPR045133 GO:0004521|GO:0004674|GO:0030968
Pumo4g02316 250 SUPERFAMILY Protein kinase-like (PK-like) 2 119 IPR011009 -
Pumo4g02316 250 ProSiteProfiles Protein kinase domain profile. 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02316 250 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 118 250 - -
Pumo4g02316 250 Gene3D Transferase(Phosphotransferase) domain 1 1 116 - -
Pumo4g02316 250 Pfam Protein kinase domain 17 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02316 250 CDD RNase_Ire1 118 246 - -
Pumo4g02316 250 SMART PGNneu 179 233 - -
Pumo4g02316 250 Gene3D KEN domain 117 250 IPR038357 -
Pumo4g02316 250 ProSiteProfiles KEN domain profile. 117 248 IPR010513 GO:0004540|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02316 Pumo-Chr4 35284945 35290118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02316 2 114 MAP Kinase Kinase Kinase AT3G06030 30.769 8.42e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Pumo4g02316 Ribonuc_2-5A 6.3e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02316 K08852 - gmx:100788389 497.664