Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02315 ATGATTGGAGTTTGGCTTGTGGTGTTGATGATTCTCTCCAAAGGGTTATGTTCAACTGGGGATGTATTGGATAATTCCTCAATACCTGCTTTTGTAAATATTGGGGTTCTCTATTCTTTCGATACAAGTGTTGGTAGAATGGTGAAAACTGCAGTACAAGCTGCGGTTGACGATGTAAATTCTGATCCATCTATTCTTGCTAACACTAAGTTGAAGGCCTCACTGCAAGAAGATACCAAATACAGAGGTTTTTTGAGCATTGCTGAGGCCTTGCAGCTCATGGCAACACAAACTGTGGCTATAATCGGCCCCCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAACGAGCTCAAAGTTCCTCTGCTATCATTCACAGCCACTGACCCTACCCTTTCTTCGCTTCAATTCCCATTCTTTATTAGAACTGCTTTTAGTGACATTTATGAAATGACTGCAATAGCAGACCTTGTTAACTACTTTGGATGGAGAGAGGTTATTGCAGTTTATGGTGATGATGACCATGGGAGGAATGGAATAGGTGCATTAGGGGATAAGCTTGCCGAGAGACGTTGCAAGATCTCATTTAAAGCACCTATGACTCCTGAGACAACTAGGGAGGAGATTACCGATGTGCTTGTTCAGGTGGCCTTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGCCCAAAAGTGTTAAGTGTGGCAAAGTCATTGGGAATGATGGAAAATGGGTATGTTTGGATAACAACTACTTTTCTGTCTTCTTGGCTGGATATAGGTAGTCCCCTATCTCCGGATGCAACGGATGACATGCAAGGAGTCATTACACTACGTATGTATATACCAGATTCAGAGCGCAAAAGATGGTTTTTTTCTAGGTGGAAAAACTTGACTACTGGAAAGTCTGCTAATGGTTCCCTTGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTTTACGCTCTTGCTCATGCACTTGATACATTTTTCAAACGAGGGAACCAAATTACATTTTCACATGATCCAAAGTTATCTCAACTACATGGAGACAACATGCATCTTGATGCTGTGAAAATATTCAATGAAGGAAATCTGTTGCGTAAATATATTTATGAGGTTAACATGACTGGTGTATCAGGTCTATTCAAGTATACATCTGATGGAAACCTTGTTAATCCTGCATATGAAATCATCAATGTGATTGGAACAGGGACTCGGAGGGTTGGTTATTGGTCTAATTACTCTGGATTATCAATTGTTCCTCCAGAAGCACTTTATTCAAAACCACCTAATCGATCCAGTGCAAGCCAAAAGCTACTCCCTGTGCTTTGGCCAGGAGAAACAACCCATAAGCCCCGTGGTTGGGTTTTTCCAAACAGTGGAAGGATGTTAAAAATTGGAGTGCCAAAAAGGGTTAGTTACCGAGAATTTGTCTCTCAAGTACAAGGCACTGACATGTTCAAGGGATTTTGCATTGATGTATTTCTTTCTGCCGTGAACTTGTTGCCCTATGCTGTCCCCTATAAATTTGTTTCATATGGGGATGGTGACAGCAATCCTAGTAACACTGAGCTTGTCCGTCTTATCACAGCGGGTGTCTTTGATGCTGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTTGCATCAGTTAAGAAGACAGATTCCAATGCTTGGGCATTTTTTACGCCATTTACACCAATGATGTGGGCTGTCACAGCTATCTTTTTTCTTCTAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGGCTGAATGATGATTTTAGGGGACCTCCCAAACAACAAATGGTCACAATTTTGTGGTTTAGTTTTTCAACCATGTTCTTTGCTCACAGGGAAAATACAGTGAGCACTCTCGGTCGCTTTGTGGTGCTTATATGGTTATTTGTAGTTCTAATAATTAACTCAAGTTACACAGCAAGCTTGACATCAATCCTCACTGTGCAACAACTTTCTTCACCTGTTAAAGGCATTGAAAGTTTAATAAACAGCAAAGAGCCTATTGGCTACTTGCAGGGTTCATTTACTCGAACTTATTTAATTGAGGAAATTGGTATCGATGAATCCAGACTAGTTCCTCTAAAAACACCAGAAGAAACTACAGAAGCACTTAAGAAAGGTCCCCAGAAGGGTGGTGTTGCTGCATACGTTGATGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTATAGCATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATTTGCCTTTCCGCGAGACTCGCCATTAGCAGTTGACCTTTCCACTGCCATATTGGAGTTGGCAGAGAATGGAGACTTGCAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCTTGCCTATCACAAGGTGCAAAGCTTGAAGTGGACAGACTCAACCTGAGAAGCTTTTGGGGCCTCTATCTGGTGTGTGGGTTGGCATGTGTGCTTGCTCTCCTCATATATCTTGTTCAGACCACGAGGCAGTACTTCAAGCACGGCCCAGAGGAGCTCGAGTCTTCCGGCCATGGCTCAGGATCTTCGCGTCTGCGCACATTCCTTACGTTCGTAGATGAAAAGGAAGAGATCGTTAAGAGTCGCTCCAAGAGAAAGAGAATGGAGGGGATATCATACAGAAGCACAAGTGAGGTGGGATCATCCATCACCTTCAACAAAGGATATTCTCAGTCATCATTAAACAGAATTGATTCAGCTAATGAAATCTAA 2817 0.4221 MIGVWLVVLMILSKGLCSTGDVLDNSSIPAFVNIGVLYSFDTSVGRMVKTAVQAAVDDVNSDPSILANTKLKASLQEDTKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELKVPLLSFTATDPTLSSLQFPFFIRTAFSDIYEMTAIADLVNYFGWREVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAPMTPETTREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWITTTFLSSWLDIGSPLSPDATDDMQGVITLRMYIPDSERKRWFFSRWKNLTTGKSANGSLGLSTYGIFAYDTVYALAHALDTFFKRGNQITFSHDPKLSQLHGDNMHLDAVKIFNEGNLLRKYIYEVNMTGVSGLFKYTSDGNLVNPAYEIINVIGTGTRRVGYWSNYSGLSIVPPEALYSKPPNRSSASQKLLPVLWPGETTHKPRGWVFPNSGRMLKIGVPKRVSYREFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFVSYGDGDSNPSNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKTDSNAWAFFTPFTPMMWAVTAIFFLLVGAVVWILEHRLNDDFRGPPKQQMVTILWFSFSTMFFAHRENTVSTLGRFVVLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIESLINSKEPIGYLQGSFTRTYLIEEIGIDESRLVPLKTPEETTEALKKGPQKGGVAAYVDERAYIELFLSSRCDYSIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLNLRSFWGLYLVCGLACVLALLIYLVQTTRQYFKHGPEELESSGHGSGSSRLRTFLTFVDEKEEIVKSRSKRKRMEGISYRSTSEVGSSITFNKGYSQSSLNRIDSANEI 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02315 938 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Pumo4g02315 938 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Pumo4g02315 938 Gene3D - 467 582 - -
Pumo4g02315 938 CDD GluR_Plant 470 812 - -
Pumo4g02315 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 887 IPR015683 -
Pumo4g02315 938 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Pumo4g02315 938 Gene3D - 759 819 - -
Pumo4g02315 938 FunFam Glutamate receptor 583 713 - -
Pumo4g02315 938 Gene3D - 50 400 - -
Pumo4g02315 938 PIRSF IGluLR_plant 1 936 IPR017103 -
Pumo4g02315 938 FunFam Glutamate receptor 467 583 - -
Pumo4g02315 938 SUPERFAMILY Periplasmic binding protein-like I 27 463 IPR028082 -
Pumo4g02315 938 Pfam Receptor family ligand binding region 48 410 IPR001828 -
Pumo4g02315 938 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Pumo4g02315 938 Gene3D - 148 425 - -
Pumo4g02315 938 Pfam Bacterial extracellular solute-binding proteins, family 3 529 812 IPR001638 -
Pumo4g02315 938 FunFam Glutamate receptor 148 296 - -
Pumo4g02315 938 FunFam Glutamate receptor 709 816 - -
Pumo4g02315 938 Gene3D - 583 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02315 Pumo-Chr4 35278710 35283861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02315 5 914 Ion Channels AT3G51480 58.488 0.0 1132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02315 K05387 - gmx:100788917 1774.6