Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02314 ATGATGTTCGACACAGTTGGAAATTTAATGCATCCATCATACGAAATCATAAATGTGATAGGCACTGGAACTAGGAGGATTGGTTATTGGTCTGAAACCTCTGGCCTCCACACTGGGGAAGCTCCTAATCATTCAAATTCTAGTGAAGGACTATATGGTGTCATATGGCCTGGTCAAACAACTCAAACCCCACGTGGTTGGAGTTTTGCCAGTAATGGAAAACCATTGAGAATTGGGGTGCCACTTGAAGTTAATTTCCAAGAGTTTGTGTCAAGAATTGAGGGCACTGAAACGTTTGGTGGTTATTGCATAGATGTGTTTACTGCTGCACTGAATTTGTTGCCTTACCCGGTACCATTCAAGTTTATTCCATTTGGTGATGGTAAAACCAACCCAACAAGTTTAGACATATTTCACATGATCACAATTGGGGCCTTCGATGCAGTGGTGGGGGACTTTACCATTACTACAGACCGAGCTAAGATAGTGGATTTTACACAGCCATTTGTTGAGTCTGGTCTAGTTGTTGTGGCGCCTATCAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTGAGACCATTCACTCCAATGATGTGGTTTGTAACAGCAATGTTTTTCTTAGTGGTGGGAACTGTTGTGTGGACTTTAGAGCGTCAAATAAATGATGACTTTAGCGGCCCTGCTAGAAGACAATTTTTCACCATTATCTGGTTTAGCTTTTCAACCCTATTTTTTGCACAGAGAGAGAATATTGTGAGCACCCTTGGTCGTTTAGTGCTACTCATATGGCTGTTTGTGGTTTTGATTCTCAACTCAAGCTATACTGCAAGCCTCACCTCCATCCTAACTGTGGAACAGCTCTCATCCCCAGTTAAGGGAATTGAAAGCTTACTAGCGAGCAACGACCGCATTGGTTTCCAGAGGGATACATTTACTGAAAATTATCTGACTGAGAAGCTCAACATACACAGGTCCAGGCTTGTTCCTCTCAACACCATATCAGAATATGAAAAAGTCTTGAAGGATGGACCAGCTAGTGGTGGTGTTGCTGCAATAATAGATGAACGTCCATACATGGAGCTCTTCCTAGCAACCAGATGTGAATTTAGTATTGTTGGTCCAGCGTTCACCAAGAACGGATGGGGTTTTGCATTCCCAAGAGACTCTCCCCTAGCAATTGACATGTCAACTGCCATCCTAAAACTATCAGAGAACGGTGAGCTTCAGAGAATTCATGACAAATGGCTCACAAAAAGTGCTTGCAGCTCAGAGGGTGCAAAACAAAGCATAGACCGACTTGAGATAAAAAGCTTTTGGGGTCTGTTCCTTCTGAGTGGCATAGCATGCTTCATTGCTCTCCTTTGCTATGTTATTAGAATGGTCTATCGTTTTAGTAGGCACACCAATGGTAACCTTGAAGGCTCATCACGTGCTGCTTGTCCTCAATGA 1449 0.4306 MMFDTVGNLMHPSYEIINVIGTGTRRIGYWSETSGLHTGEAPNHSNSSEGLYGVIWPGQTTQTPRGWSFASNGKPLRIGVPLEVNFQEFVSRIEGTETFGGYCIDVFTAALNLLPYPVPFKFIPFGDGKTNPTSLDIFHMITIGAFDAVVGDFTITTDRAKIVDFTQPFVESGLVVVAPIKKLKSSAWAFLRPFTPMMWFVTAMFFLVVGTVVWTLERQINDDFSGPARRQFFTIIWFSFSTLFFAQRENIVSTLGRLVLLIWLFVVLILNSSYTASLTSILTVEQLSSPVKGIESLLASNDRIGFQRDTFTENYLTEKLNIHRSRLVPLNTISEYEKVLKDGPASGGVAAIIDERPYMELFLATRCEFSIVGPAFTKNGWGFAFPRDSPLAIDMSTAILKLSENGELQRIHDKWLTKSACSSEGAKQSIDRLEIKSFWGLFLLSGIACFIALLCYVIRMVYRFSRHTNGNLEGSSRAACPQ 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02314 482 Gene3D - 3 76 - -
Pumo4g02314 482 Pfam Ligand-gated ion channel 418 449 IPR001320 GO:0015276|GO:0016020
Pumo4g02314 482 Gene3D - 187 319 - -
Pumo4g02314 482 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 467 IPR015683 -
Pumo4g02314 482 FunFam Glutamate receptor 187 317 - -
Pumo4g02314 482 Gene3D - 363 423 - -
Pumo4g02314 482 FunFam Glutamate receptor 71 187 - -
Pumo4g02314 482 CDD GluR_Plant 74 416 - -
Pumo4g02314 482 FunFam Glutamate receptor 313 420 - -
Pumo4g02314 482 Pfam Bacterial extracellular solute-binding proteins, family 3 133 417 IPR001638 -
Pumo4g02314 482 SUPERFAMILY Periplasmic binding protein-like II 52 419 - -
Pumo4g02314 482 Gene3D - 77 186 - -
Pumo4g02314 482 SMART GluR_14 75 418 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02314 Pumo-Chr4 35131430 35133826 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02314 11 476 Ion Channels AT1G42540 63.223 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02314 K05387 - gmx:100789442 819.305