Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02311 ATGACACATTTGGTTGAGTCTAGAGTTGTCGAAATTGTAAAATACAACATGAGCAAAGTTTGGCTTCTTGTCCTTGTCATCTTCTACAGTGGCTTTCCCTCAAAAGCAACCACCAATGATTCTACAACACCAAGTGCCGTTAACATTGGGGCAATTTTATCTTTCAATTCAACAATTGGTAGAGTGGCCAAAGTTGCCATACAAGCAGCAGTGGATGACATAAATTCCAATGCAACAATTCTCAATGGAACTAAGCTTAATATTTCAATGCTGGACACCAAATTATCCACTGGATTCTTAGGAATCATTGATTGTGTTATCACCTTGCGCATGCATACACCAGATTTAGACATAAAAAAGAAATTCATTTCTAGGTGGAAAAAACTGAGCCAAAAAGAAGATCCTAATCAGGACCCTTTTGGGTTAAATATCTTTGGCCTCTACGCCTATGACACGGTTTGGGTGCTTGCTTCTGCACTAGATGCATTTTTTAAGGATGGGGGAACTTTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGAGGGGACACCCTTAACTTAGATACTATGGGGGTCTTTGTTGATGGTAACATGTTGCGGCAAAAAATTTTAGAAGTGAACAGAACTGGTTTAACAGGCCAAATGGTGTTTAGTCCAGATGGAAACTTGGTGCATCCATCATATGAAGTCATTAATGTGATAGGTACTGGAATTAGGAGGATTGGTTATTGGTCTGAAACCTCTGGCCTCCACACTGGGGAAGGTCCTAATCATTCTAATTCTAGTGAAGGACTATATGGTGTCATTTGGCCTGGTCAAACAACCCAAACCCCACGTGGTTGGGTTTTTGCCAGCAATGGAAGACACTTGAGAATTGGGGTGCCACTTCGAATTAGTTACCGTGAGTTTGTGTCAAGAATTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTTACTGCTGCTCTCAACTTGTTGCCTTATCCGGTACCATTCAAGTTTATTCCATTTGGTGATGGTAAAACCAACCCCTTAAATTCAGACCTTCTTCACATGATCACAACTGGTGCCTTCGATGCTGTGGTGGGGGACATTACCATTACTACAAACCGAACTAAGATGGTGGATTTTACACAGCCATATATTGAGTCTGGACTAGTTGTTGTGGCACCTATCAAGAAGCTGAAATCCAGTGCTTGGGCTTTCCTCACACCATTCACTCCAATGATGTGGTTTGTCACAGGAATGTTTTTCTTGGTGGTGGGTTCTGTTGTGTGGATTTTAGAGCGTCGCATAAATGATGACTTTAGAGGCCCTCCTAGAAGACAATTTGTCACCATTATCTGGTTTAGCTTTTCAACCCTATTTTTTGCACATAAACTTCCAGGGTTTGCACCTCCCAATGCTTAG 1419 0.4109 MTHLVESRVVEIVKYNMSKVWLLVLVIFYSGFPSKATTNDSTTPSAVNIGAILSFNSTIGRVAKVAIQAAVDDINSNATILNGTKLNISMLDTKLSTGFLGIIDCVITLRMHTPDLDIKKKFISRWKKLSQKEDPNQDPFGLNIFGLYAYDTVWVLASALDAFFKDGGTLSFSNDSSLNMLRGDTLNLDTMGVFVDGNMLRQKILEVNRTGLTGQMVFSPDGNLVHPSYEVINVIGTGIRRIGYWSETSGLHTGEGPNHSNSSEGLYGVIWPGQTTQTPRGWVFASNGRHLRIGVPLRISYREFVSRIEGTEMFGGYCIDVFTAALNLLPYPVPFKFIPFGDGKTNPLNSDLLHMITTGAFDAVVGDITITTNRTKMVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFTPMMWFVTGMFFLVVGSVVWILERRINDDFRGPPRRQFVTIIWFSFSTLFFAHKLPGFAPPNA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02311 472 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 115 457 IPR015683 -
Pumo4g02311 472 Gene3D - 282 401 - -
Pumo4g02311 472 Pfam Receptor family ligand binding region 103 236 IPR001828 -
Pumo4g02311 472 Gene3D - 108 226 - -
Pumo4g02311 472 Gene3D - 41 107 - -
Pumo4g02311 472 SUPERFAMILY Periplasmic binding protein-like II 267 419 - -
Pumo4g02311 472 SUPERFAMILY Periplasmic binding protein-like I 45 96 IPR028082 -
Pumo4g02311 472 Pfam Bacterial extracellular solute-binding proteins, family 3 350 396 IPR001638 -
Pumo4g02311 472 Gene3D - 402 469 - -
Pumo4g02311 472 SMART GluR_14 292 455 IPR001320 GO:0015276|GO:0016020
Pumo4g02311 472 FunFam Glutamate receptor 286 402 - -
Pumo4g02311 472 SUPERFAMILY Periplasmic binding protein-like I 105 282 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02311 Pumo-Chr4 35106179 35110445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02311 100 463 Ion Channels AT1G42540 59.893 1.35e-149 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02311 K05387 - gmx:100789442 698.738