Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02310 ATGAGAAAAGTTTGGCTCCTTGTCCTAGTGATGTTCTACCATGGCTTTCCTTCAAAAGGAATCGGCAATGTTTCTGCAAGACCAAGTACGGTTAACATAGGGGCACTTATGTCCTTCAATTCAACCGTTGGCAGAGTGGCTAAAGTTGCTATAGAAGCTGCAGTGGATGATATAAATTCCAATGCAACCATTCTCAATGGAACTAAGCTTAATATCTCAATGCTCGACACCAAACTATCCACTGGATTCCTAGGAATCATTGACTGTCTAATCACCTTGCGCATGTATACACCAGAGTCAGAAATCAAAAGAAAGTTTGGTTCTAGGTGGAACAAACTGAGCCAAGAAAAGGATCCTGAAGATGGTCCTTTTGCATTGAACACCTATGGCCTTTACGCCTATGACACTATCTGGTTGCTTGCTTCTGCACTTGATGCATTTTTTAAGAGTGGGGGAACTTTGTCATTTTCTAATGATTCAAGTCTAAACATGTTAAGGGGGGACACCCTTCACTTGGATACTATGGGGGTCTTTGTTGATGGTGGTATGTTGCTTCAAAAAATTTTAGAAGTGAACAGAACTGGCTTAACAGGCCAAATGATGTTTGGTCCAGATGGGAACTTAGTGCATCCATCATATGAAGTCATTAATGTGATAGGCACTGGAATTAGGAGGATTGGTTATTGGTCTGAAACCTCTGGCCTCCACACTGGGGAAGCTCCTAATCATTCCAATTCTAGTGAAGGACTATATGGTGTCATTTGGCCTGGTCAAACAACCCAAACCCCACGTGGTTGGGTTTTTGCAAGCAATGGAAGACACTTGAGAATTGGGGTGCCACTCAGAATTAGTTACCGTGAATTTGTGTCAAGAACTGAGGGAACTGAGATGTTTGGTGGTTATTGCATTGATGTGTTTACTGCTGCCCTCAACTTGTTGCCTTATCCTGTTCCCTACAAGTTTCTTCCATTTGGAGATGGTAAAACCAACCCACTAAATACAAAACTTCTCAACAAGATCACAGCTGGGGAGTTCGATGCTGTTGTGGGGGACATTACCATTACCACAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCTGGGTTAGTTGTTGTAGCACCTATTAGGAAGATGAAATCCAGTGCTTGGGCTTTCCTGAGACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTGGTTGTGGGAGCTGTTGTGTGGATTTTAGAACGTCGCTTAAATGATGAATTTAGAGGCCCAGCAAGAAGGCAGTTTGTGACCATTATATGGTTTAGCTTCTCAACCCTGTTTTTTGCTCATAAATGCATACTCAATTTCAAACGAATTACTCAAGCACAGGCCTATTATGCCCTTGAGGCATTCCCAAGAGACTCTCCCCTAGCAATTGACATGTCTACTGCCATCCTAAAACTATCAGAGAATGGTGACCTTCAGAGAATTCATGACAAATGGCTAACAAGAAGTGCATGCAGCTCTGAGGGTGCAAAACAAGGCATAGACAGACTTGAGCTAGAAAGCTTTTGGGGTCTGTTCCTGCTGAGTGGCATAGCATGCTTCATTGCTCTCCTTTGCTATGTTGTTAGAATGGTATACCGTTTCAGCAGACACCCCAATAGCAGCCCTGAGGGATCATCACACTCTACTCGTCTTAGATCATTCTTTACCTTTGTGAATGAAAGAGAGGAGGAAGACAAAAACGTGTCAAAGAGAAAACGAACCGAAAATAAGGGATCTAGCAGAAGGGTGGCACATGATGAAGATGGATTGGATGGCTCAAGTGTTAGTGTCCATATTGAAAACCATGCCTAA 1848 0.4259 MRKVWLLVLVMFYHGFPSKGIGNVSARPSTVNIGALMSFNSTVGRVAKVAIEAAVDDINSNATILNGTKLNISMLDTKLSTGFLGIIDCLITLRMYTPESEIKRKFGSRWNKLSQEKDPEDGPFALNTYGLYAYDTIWLLASALDAFFKSGGTLSFSNDSSLNMLRGDTLHLDTMGVFVDGGMLLQKILEVNRTGLTGQMMFGPDGNLVHPSYEVINVIGTGIRRIGYWSETSGLHTGEAPNHSNSSEGLYGVIWPGQTTQTPRGWVFASNGRHLRIGVPLRISYREFVSRTEGTEMFGGYCIDVFTAALNLLPYPVPYKFLPFGDGKTNPLNTKLLNKITAGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSSAWAFLRPFTPMMWFVTGMFFLVVGAVVWILERRLNDEFRGPARRQFVTIIWFSFSTLFFAHKCILNFKRITQAQAYYALEAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLELESFWGLFLLSGIACFIALLCYVVRMVYRFSRHPNSSPEGSSHSTRLRSFFTFVNEREEEDKNVSKRKRTENKGSSRRVAHDEDGLDGSSVSVHIENHA 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02310 615 SUPERFAMILY Periplasmic binding protein-like I 26 80 IPR028082 -
Pumo4g02310 615 Pfam Receptor family ligand binding region 88 220 IPR001828 -
Pumo4g02310 615 SUPERFAMILY Periplasmic binding protein-like I 90 266 IPR028082 -
Pumo4g02310 615 Gene3D - 26 91 - -
Pumo4g02310 615 MobiDBLite consensus disorder prediction 574 607 - -
Pumo4g02310 615 MobiDBLite consensus disorder prediction 574 605 - -
Pumo4g02310 615 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 460 574 IPR015683 -
Pumo4g02310 615 FunFam Glutamate receptor 466 497 - -
Pumo4g02310 615 Gene3D - 452 505 - -
Pumo4g02310 615 FunFam Glutamate receptor 270 386 - -
Pumo4g02310 615 SUPERFAMILY Periplasmic binding protein-like II 251 500 - -
Pumo4g02310 615 Pfam Bacterial extracellular solute-binding proteins, family 3 334 379 IPR001638 -
Pumo4g02310 615 Gene3D - 92 210 - -
Pumo4g02310 615 SMART GluR_14 276 500 IPR001320 GO:0015276|GO:0016020
Pumo4g02310 615 Gene3D - 246 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02310 Pumo-Chr4 35090556 35095360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02310 1 90 Ion Channels AT1G42540 40.217 2.09e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02310 K05387 - gmx:100790502 702.975