Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02309 ATGTCGTGTTCTTCTTCATCTGGGTCTGAAGAGGACGATGAGGGGTTCGACTCTTACCGGAAAGGAGGGTACCACGCCGTCAGAGTCGCCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAGCTCGGCTGGGGCCAGTTTTCAACCGTTTGGCTTGCCTATGATACTACAACATCTGCATATGTTGCTCTCAAGATCCAGAAAAGTGCGGCCCAGTTTGTTCAGGCTGCCCTTCATGAAATTGATGTTCTTTCATCCCTTGCTGATGGTGTTGATATGGATTCAAAATGTGTTGTTCATTTGATTGACCACTTTAAGCACACAGGTCCTAATGGCCAGCACCTTTGCATGGTGCTTGAGTTTCTTGGGGATAGCTTGCTTCGTCTAATCAAATATAACCGGTACAAAGGCCTTCCGCTGAATAAAGTTAGGGAGATTTGCAAGTGCATTTTGATTGGTTTGGATTATTTGCATAGAGAACATGGTATTATCCACACAGACCTAAAACCAGAAAATGTTCTTCTGGTTTCTACTATTGATCCTGCCAAAGACCCTGTTAGATCTGAAGTCACCCCAATATTAGAGAGGCCTGAGGGAAACACAAATGGTGGTGGAGTTACTAGTCTTATTGAGAAAAAATTGAAAAGAAGAGCTAGGAGGGCAGTTGCAAAAATATCTGGGAGAAGTGCTTCAATAGGAGGAATTGAAGCTCCAAAGTCTGAGAGAAATCTTGATGGGATTGATGTGAGATGCAAGGTGGTAGATTTTGGAAATGCTTGTTGGGCCGATAAGCAGTTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGGCTGGTTATTCCTTCTCTGTTGACATGTGGTCTTTCGCTTGCATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTTACTCCCAAGGTTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTCGGAAAGATGCCGCGGAAGGTTGCTACTGCTGGAGCAAAATCCAAGGACTTCTTTGACAGACATGGGGATCTCAAAAGGATTCGAAGACTAAAGTTTTGGCCGCTAAACAAATTGTTGGTTGATAGATATAAATTTTCAGAGAGCGATGCTCATGAGTTGTCAGAGTTTCTTCTGCCACTTCTAGATTTTGCACCCGAGAAGCGGCCAACGGCACAGCAGTGCCTGCAACACCCATGGCTCCAGGGCATAGAGTCTACACCAGAGTGA 1266 0.4542 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSAYVALKIQKSAAQFVQAALHEIDVLSSLADGVDMDSKCVVHLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKGLPLNKVREICKCILIGLDYLHREHGIIHTDLKPENVLLVSTIDPAKDPVRSEVTPILERPEGNTNGGGVTSLIEKKLKRRARRAVAKISGRSASIGGIEAPKSERNLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKVATAGAKSKDFFDRHGDLKRIRRLKFWPLNKLLVDRYKFSESDAHELSEFLLPLLDFAPEKRPTAQQCLQHPWLQGIESTPE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02309 421 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02309 421 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02309 421 FunFam Protein kinase superfamily protein 24 123 - -
Pumo4g02309 421 CDD STKc_SRPK 27 413 - -
Pumo4g02309 421 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 241 415 - -
Pumo4g02309 421 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Pumo4g02309 421 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Pumo4g02309 421 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02309 421 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02309 421 SUPERFAMILY Protein kinase-like (PK-like) 32 417 IPR011009 -
Pumo4g02309 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Pumo4g02309 421 FunFam Serine/threonine-protein kinase SRPK 117 413 - -
Pumo4g02309 421 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02309 Pumo-Chr4 35059259 35063685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02309 4 416 EF-hand Containing Proteins AT5G22840 51.404 1.59e-169 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Pumo4g02309 Pkinase 5.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02309 K08832 - gmx:100811724 800.045