Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02304 ATGCCGAAAGCCAAATCTGACGCCAAACCCGCCGATAACCGGTTGAAGCGCAAGGGCGCTGGTGCCGGAAGGAAGCAATCGAAGAAGGCTGCTAAGGATCCTAACAAGCCGAAGAGACCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAGCAGTTCAAGAAGGAACATCCTAACAACAAATCCGTCGCTGTTGTCGGTAAAGCTGGTGGTGACAAATGGAAATCCTTGTCTGATGCTGAGAAAGCTCCCTTCGTTGCTAGGGCTGAGAAGAAGAAGGAGGAGTATGATAAAAGTATTTTGGCCTACAACAAGAAATTGGAGGGAAAGAATTCTGAGGAAGACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGATGAGGATGAGGAGGATGAGGAGGACGATGATGAGTGA 423 0.4752 MPKAKSDAKPADNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGDKWKSLSDAEKAPFVARAEKKKEEYDKSILAYNKKLEGKNSEEDESDKSKSEVNDDEDEEDEEDDDE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02304 140 CDD HMG-box_AtHMGB1-like 38 98 - -
Pumo4g02304 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Pumo4g02304 140 Coils Coil 88 108 - -
Pumo4g02304 140 Coils Coil 112 132 - -
Pumo4g02304 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 139 IPR031061 -
Pumo4g02304 140 SMART hmgende2 36 107 IPR009071 -
Pumo4g02304 140 MobiDBLite consensus disorder prediction 1 19 - -
Pumo4g02304 140 MobiDBLite consensus disorder prediction 104 121 - -
Pumo4g02304 140 MobiDBLite consensus disorder prediction 1 43 - -
Pumo4g02304 140 Gene3D High mobility group box domain 21 123 IPR036910 -
Pumo4g02304 140 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Pumo4g02304 140 MobiDBLite consensus disorder prediction 104 140 - -
Pumo4g02304 140 MobiDBLite consensus disorder prediction 122 140 - -
Pumo4g02304 140 SUPERFAMILY HMG-box 28 110 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02304 Pumo-Chr4 34993158 34995175 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pumo4g02304 HMG_box 5.1e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02304 K25507 - gmx:100305957 212.231