Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02296 ATGGGAGGTGACAGTGCCGTTGAGGAATCCGAAGGGGTCAACGTCAACATCAACGTTCGCTGCTCCAACGGTTCCAAATTTTCCGTTCAGATTGCCGTCGATTCCACCGTCAGTTCCTTCAAGGACGCAGTTGCTCGCAACTGCGACATTCCTGTCGAACAACAGCGCCTCATTTACAAGGGTCGCATCTTGAAGGATGATCAAACCCTCCGAAGCTACGGTTTGGAGGCCGATCACACTGTCCATTTGGTTCGTGGCTCTGCTCCTGCCAATCCAACTGTTGGGACCAATACTAGTAGCACCAATACCAATTCCACAACAAATAATGCTAGAGGTGCTGGTGCGAATGAAGGTGGGGGTTTAGGAGGGCTTGGTTTTGGAGCTTCACTATTCCCTGGACTAGGTGCTGGTGGGACTGGGGGCAATGGTTTATTTGGCGAGGGATTTCCTGATCTTGAACAAATGCAGCAACCATTTATTTCAAATCCAAATTTAGTGAGAGAAATAATGAATTCACCTGCTATGCAGAATCTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAATGATCCTAGCACTCTCCGCCAGACACTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAACACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACGATGGCTGGTAATACAGGAAATAATAATGCAGCAATTTCAGGGACTCATGGTGGCCATGCAAGGGACCAATCAACTAATCCCTCAACTACTAGTTCTGTAGCAACTGCTGGTTCTCCCTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACTGGAACTGGAGGTGCTCAAACTAACACCAGAAGGTCGTCAACCACTGGTGTGGATGCCAGGCAGCAAGGACCTAATGGCTTAGGAGGGCTTGGTTTGCCAGACCTTGAAAGCATGCTGGGTGGCAGTGCTATGCCATGA 1101 0.4705 MGGDSAVEESEGVNVNINVRCSNGSKFSVQIAVDSTVSSFKDAVARNCDIPVEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGSAPANPTVGTNTSSTNTNSTTNNARGAGANEGGGLGGLGFGASLFPGLGAGGTGGNGLFGEGFPDLEQMQQPFISNPNLVREIMNSPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAISGTHGGHARDQSTNPSTTSSVATAGSPLPNTNPLPNPWSSTGTGGAQTNTRRSSTTGVDARQQGPNGLGGLGLPDLESMLGGSAMP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02296 366 SMART ubq_7 15 86 IPR000626 GO:0005515
Pumo4g02296 366 SUPERFAMILY Ubiquitin-like 13 102 IPR029071 -
Pumo4g02296 366 Gene3D - 187 245 - -
Pumo4g02296 366 CDD Ubl_Dsk2p_like 15 87 - -
Pumo4g02296 366 FunFam Ubiquitin domain-containing protein DSK2b 12 98 - -
Pumo4g02296 366 PANTHER UBIQUILIN 15 350 IPR015496 -
Pumo4g02296 366 MobiDBLite consensus disorder prediction 267 366 - -
Pumo4g02296 366 MobiDBLite consensus disorder prediction 90 109 - -
Pumo4g02296 366 MobiDBLite consensus disorder prediction 86 109 - -
Pumo4g02296 366 MobiDBLite consensus disorder prediction 267 342 - -
Pumo4g02296 366 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Pumo4g02296 366 FunFam Ubiquitin domain-containing protein DSK2b 189 245 - -
Pumo4g02296 366 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
Pumo4g02296 366 Gene3D - 4 99 - -
Pumo4g02296 366 SMART CBM 192 231 IPR006636 -
Pumo4g02296 366 SMART CBM 138 179 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02296 Pumo-Chr4 34801154 34805643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02296 15 88 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 32.468 5.05e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02296 K04523 - gmx:100776447 583.948