Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02291 ATGGCATCCTCATCATCTACTAAAGTAAAACATGATGTCTTCATCAGCTTTAGAGGCAGAGACGTCCGCAAAGGTCTGCTTAGCCATTTGAAGAAAGAATTGCGTCGCAGGCAGATTGATGCCTATGTGGATGAGGAGAGACTTGGCAGAGGAGATGAAATATCATCCTCACTTCTCAGAGCAATTGAAGGGTCACAAATTTTATTGGTCATATTCTCAAAAGACTATGCTTCATCACAGTGGTGCTTGGATGAACTTGCCAAAATGATTGAATCCATGGAAAGAAATAAACAGATTGTACTACCTGTTTTCTTCAATGTAGATCCATCACATGTGCGCCACCAATGTGGAGATTATGGAGATGCTTTAGCTAAACATGAGGAAAAACTCAAAGAAAATATGCTCAAGGTACAAAGTTGGAGATCTGCTATGAAAAAAGCCGCTGATTTATCAGGGTTTCATTATCCAACAAATTTTGAGAATGAATCTGATCTTGTGGACGAAATCGTGGAAGACATTTCAGTAAAATTGAGCAAGTTTTGCCCAAGTGAATCAAATGGTCTCGTTGGAATGGATCAAAACATTGCACAGATTCAGTCCCTACTGTTAATGGAACCAAGCGAAGTTCTTTTTGTTGGAATCTGGGGCATGGGTGGCATAGGTAAGACAACCATTTCCCACACTATATATGATAAATACTCTCCTCAATATGATGGTTGCTGCTTCTTGAATGTAAGAGAAGAATCGGAACAACATGGATTGAGTTTTTTACGAGAGAAACTTATATCTGAACTATTTGAGGGAGAAGGTCTCCATACAAGAGGCTCAAGCAAAGCAAGATTCTTCAATTCTGCTGTCAAAAGGATGGGTCGGAAAAAATTTCTGGTTGTGCTTGATGATGTGAATACTTCTGAAGAATTAAAATACCTGGTTGGCGAACCAATTTGCTTCGGTGCAGGGAGTAGAGTGATCATAACAAGTAGAGATCAGGATGTGCTTACAAGTGGAGGTGTTCACCAAATTCATGAGATCAAGGAAATGGACCCGCGAGATTCCCTCAAACTCTTCTGCTTAAATGCCTTCAATGAAAGCCAACCCAAAATGGGATATGAAAAACTAACCGAAGAGGTAGTTAAAATCGCCCAGGGCAATCCATTAGCTTTCAAATTTTTAGGTGCATATTTCCATTCCAGAAGCACTATAAACACATGGGAGTGTGCATTAAGCAAAATCAAGAAGTATCCCAATGAGAAAATTCAAAGTGTGTTGAGGTTCAGTTTTGATGGACTGCATGAAGTAGAGAAAAAGGCATTTCTAGGCATTGCATTCTTTTTCGAAGAAGACAGCAAAGACTATGTGATAAGGAAACTGGATGCTTGGGGATTTCATGGAGCTAGTGGAATAGAGGTTCTCCAACAAAAAGCTCTGATAACAATTTCAAATGACAACAGAATACAAATGCATGACTTGATACGACAAATGGGTTGCGAAATAGTTCGTCAAGAATCTATTATATGTCCAAGAAGACGCAGCCGATTGAGGGATAAAGAGGAAGTGTCCCATGTATTGAGACAGAATCTGGGAACTGATGAGGTGGAGGCCATGCAAATAGACGTGTCTGGAATTAAAGATTTACCTTTAAAATTAGGCACTTTTAAAAAGATGCCTCGTCTAAGATTTCTCAAATTTTATCTCCCATTGCAAAGCCATGATGGACCTAATATTTGGTCTCCGGAAAAACAAGATGCATTGCTTTTATCTGCAGGGTCCAAAGAACTCATGAGCATTGCAAGCGAGATTCACATAAAATGCATTCACTACTTTTTCATTGATGACTGCTCCGATCCTTCGCGACTGGACGAACTAACATCAACAGAAATGAGCATGCTGCAGACCATAGCACAGGACGTTGGAGTGGAAATAATATTGAACTCATCCATTGGACACCTCAGCAGCCTTGAATGCTCAGATGTGCTTGATAAAAAATTCAAGAATTTTCCCAATGAGCTTCTTTGCTTAAGATGCACCTATTACCTTAAGCTTTCTAGGAACAGACAACAAGACACCGAGAAACCGAAGCTACATGTTCTATTTGATAGCTTAAGGTGTTATCAACGAATTTCCGTCAGCCAGTTGCACAACACAGTTGTCCTGTTTGCACGGGGTAGTCGGGCAGAGATGTGGCTGAAGGGGGCGAAAAAGGAGGTGAAAGGCTTTGTCGTTGCCATGTTCTACATACATCTTTACACTGCTCTTTTCTTCCTATCTCCTTCTGCCTTTTCCAACACCTTACTCATTCAAATGCTCCTACTGCTATATGATGAGCTTCCTGCATTCTATCATCTCTTTCTCCTTGTTGCTCAGAAGCTTCAATCATCTCAACTTCTTTGTTTTGAGAAGTGA 2403 0.4028 MASSSSTKVKHDVFISFRGRDVRKGLLSHLKKELRRRQIDAYVDEERLGRGDEISSSLLRAIEGSQILLVIFSKDYASSQWCLDELAKMIESMERNKQIVLPVFFNVDPSHVRHQCGDYGDALAKHEEKLKENMLKVQSWRSAMKKAADLSGFHYPTNFENESDLVDEIVEDISVKLSKFCPSESNGLVGMDQNIAQIQSLLLMEPSEVLFVGIWGMGGIGKTTISHTIYDKYSPQYDGCCFLNVREESEQHGLSFLREKLISELFEGEGLHTRGSSKARFFNSAVKRMGRKKFLVVLDDVNTSEELKYLVGEPICFGAGSRVIITSRDQDVLTSGGVHQIHEIKEMDPRDSLKLFCLNAFNESQPKMGYEKLTEEVVKIAQGNPLAFKFLGAYFHSRSTINTWECALSKIKKYPNEKIQSVLRFSFDGLHEVEKKAFLGIAFFFEEDSKDYVIRKLDAWGFHGASGIEVLQQKALITISNDNRIQMHDLIRQMGCEIVRQESIICPRRRSRLRDKEEVSHVLRQNLGTDEVEAMQIDVSGIKDLPLKLGTFKKMPRLRFLKFYLPLQSHDGPNIWSPEKQDALLLSAGSKELMSIASEIHIKCIHYFFIDDCSDPSRLDELTSTEMSMLQTIAQDVGVEIILNSSIGHLSSLECSDVLDKKFKNFPNELLCLRCTYYLKLSRNRQQDTEKPKLHVLFDSLRCYQRISVSQLHNTVVLFARGSRAEMWLKGAKKEVKGFVVAMFYIHLYTALFFLSPSAFSNTLLIQMLLLLYDELPAFYHLFLLVAQKLQSSQLLCFEK 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02291 800 Gene3D - 4 177 IPR035897 -
Pumo4g02291 800 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 179 - -
Pumo4g02291 800 Pfam TIR domain 10 186 IPR000157 GO:0007165
Pumo4g02291 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 439 IPR027417 -
Pumo4g02291 800 Gene3D - 347 431 IPR042197 -
Pumo4g02291 800 Gene3D - 178 341 IPR027417 -
Pumo4g02291 800 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 697 IPR044974 GO:0006952
Pumo4g02291 800 SUPERFAMILY "Winged helix" DNA-binding domain 418 503 IPR036390 -
Pumo4g02291 800 Pfam NB-ARC domain 193 420 IPR002182 GO:0043531
Pumo4g02291 800 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 153 IPR035897 -
Pumo4g02291 800 SMART till_3 10 150 IPR000157 GO:0007165
Pumo4g02291 800 PRINTS Disease resistance protein signature 288 302 - -
Pumo4g02291 800 PRINTS Disease resistance protein signature 211 226 - -
Pumo4g02291 800 PRINTS Disease resistance protein signature 381 395 - -
Pumo4g02291 800 ProSiteProfiles TIR domain profile. 9 177 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02291 Pumo-Chr4 34364312 34375406 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02291 6 564 WRKY Transcription Factor Family AT4G12020 32.028 1.40e-66 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02291 - - gmx:100305455 1136.71