LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g02266	ATGAGTTCTAACATTCCTTATGGTATCCCTTTTATTCCATCCTCGCTTTTGCCAACGGAGGCATCACCCGAGTGGAACAACAAAGCCGACAACGCATGGCAAATCACCGCGGCAACCTTAGTGGGCCTGCAGAGCGTTCCTGGGCTCGTGATCCTCTACGGCAGCATGGTGAAGCGAAAATGGGCCGTGAACTCGGCCTTCATGGCCCTGTACGCCTTTGCATGCGTGCTCATTTGTTGGGTCTCGTGGGCCCACCGCATGGCCTTCGGGGCCAGGCTTTTGCCGTTCGTGGGAAAGCCCAACCACGCTCTGGCTGAGAAGTTTCTCCTTGCAAAGTCAACGATTGGGTATTTTCCAATGGCTGACTTTGTGTTGTATCAATTTGCTTTTGCCGCAATTACTCTTGTGTTGCTTGCAGGGTCTTTGCTGGGGAGAATGAACTTCTATGCGTGGATGCTGTTTGTGCCTTTGTGGCTTACTTTGTCTTACACCGTTGGTGCCTTCAGCATATGGGACGATGATGGGTTCCTTAACGGGAAAATAATCGATTATGCTGGTGGATTTGTTATTCATTTGTCTTCTGGCGTTGCGGGTTTCACAGCTGCTTATTGGGTTGGTCCAAGAATGTCACATGACAGGCAAAACTTTCCACCAAATAACATAATTCACATGCTTGGAGGTGCAGGGTTTTTGTGGATGGGTTGGACAGGGTTCAATGGTGGAGCTCCATTTCAAGTGGGAGAAATCGCATCCTTGGCCATCTACAATACCCATCTATGCACTGCCACAAGCCTACTCGTTTGGCTTACACTGGACATGATTGTATATACCAAGAGCTCAGTCATAGGTGCCGTCCAGGGAATGATCACTGGCCTCGTCTGCATCACACCAGGTGCAGGCTTGGTGGATCCATGGGCAGCAGTATTGATGGGAGCTTTGTCTGGTTCCATTCCATGGTACACCATGATGGTGTTACATAAAAAATCCGCATTCTTTCAGAGTGTAGATGATACATTAGGAGTCTTTCACACTCATGCTGTGGCTGGTCTTCTTGGGGGTCTTCTTTCCGGTGTGTTTGCCAGACCCGAACTTCTAAGTATAATGTATCACGATACAAATTATTGCCCCGGCTTATTCTATAGCTTTTTTAAAGGGGAAGTGGATAAAGGCTTTTGGCAAATTTGGTACCAGTTACTTGGAGCAGGTTTTGTTATTGTTTGGAATGTCGTTGTTACTAGCCTCATTTGTATTCTTATAAGCCGCATTGTGGATCTTAGGATGCAAGAAGAGGACCTTGAGGTTGGTGATGATGCTGCTCATGGGGAAGAAGCTTACGCATTGTGGGGTGATGGAGAGAGAATGAGGGTCCCTCTTCGTCTTCATATAAGTCCAACAATTCCTTCCCTATGCACGCGAAGGTTTTCAATTCCTCTCACTAGGAAAGAACAAGAATAG	1455	0.4742	MSSNIPYGIPFIPSSLLPTEASPEWNNKADNAWQITAATLVGLQSVPGLVILYGSMVKRKWAVNSAFMALYAFACVLICWVSWAHRMAFGARLLPFVGKPNHALAEKFLLAKSTIGYFPMADFVLYQFAFAAITLVLLAGSLLGRMNFYAWMLFVPLWLTLSYTVGAFSIWDDDGFLNGKIIDYAGGFVIHLSSGVAGFTAAYWVGPRMSHDRQNFPPNNIIHMLGGAGFLWMGWTGFNGGAPFQVGEIASLAIYNTHLCTATSLLVWLTLDMIVYTKSSVIGAVQGMITGLVCITPGAGLVDPWAAVLMGALSGSIPWYTMMVLHKKSAFFQSVDDTLGVFHTHAVAGLLGGLLSGVFARPELLSIMYHDTNYCPGLFYSFFKGEVDKGFWQIWYQLLGAGFVIVWNVVVTSLICILISRIVDLRMQEEDLEVGDDAAHGEEAYALWGDGERMRVPLRLHISPTIPSLCTRRFSIPLTRKEQE	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g02266	484	FunFam	Ammonium transporter	15	448	-	-
	Pumo4g02266	484	PANTHER	AMMONIUM TRANSPORTER MEP2	15	454	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Pumo4g02266	484	Pfam	Ammonium Transporter Family	32	445	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Pumo4g02266	484	Gene3D	Ammonium transporter AmtB like domains	16	448	IPR029020	-
	Pumo4g02266	484	SUPERFAMILY	Ammonium transporter	25	426	-	-
	Pumo4g02266	484	PRINTS	Rhesus blood group protein signature	127	143	IPR002229	GO:0005886
	Pumo4g02266	484	PRINTS	Rhesus blood group protein signature	253	275	IPR002229	GO:0005886
	Pumo4g02266	484	PRINTS	Rhesus blood group protein signature	222	240	IPR002229	GO:0005886
	Pumo4g02266	484	PRINTS	Rhesus blood group protein signature	346	362	IPR002229	GO:0005886
	Pumo4g02266	484	NCBIfam	ammonium transporter	30	445	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Pumo4g02266	484	ProSitePatterns	Ammonium transporters signature.	183	208	IPR018047	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g02266	Pumo-Chr4	33974081	33978528	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g02266	120	453	Inorganic Solute Cotransporters	AT2G38290	59.581	5.59e-134	389

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g02266	K03320		-	gmx:100815876	919.842