Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02263 ATGGCTGATTCTCCCCTCGCAAGGAATTCAAGGTCCCCTTCCCCGTGGAAAGCTCAGTTGAGATCGAGGTCTAGGTCAAGGTCTAGGTCTAGGCCTAGACAAAGGCCAAGATCCCGTTCTAGAAGTCGTGGCAGGTCAAGGTCACGAAGTCATGGAAGGTCTGAGCCTTCAAATCCTGGTGACACACTTTATGTAACTGGTCTATCTTCAAGGGTCACCGAAAGAAACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAAGATGCAGACCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTTGAGCGGTCACGAAGAAAACGCGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACTAGAGACTATGGCTATCGTGGTGACCAGGGAAGGTATCGTGACGGTCCTGACCGTTACGATTATTCACATCGTAGGTCTCCACGGCGTTCACCATACAGAGGCGGCCAAGATTATTCACCCCGGCGCTCACCCTATGGGGGAAGGTCTAGGAGGGATAGGTCTAGGTCGCTTCCATATTCTCCACATGGTAGCCCAGACAGGAAGTATGCTCGTGGATCTAGGTGA 693 0.4978 MADSPLARNSRSPSPWKAQLRSRSRSRSRSRPRQRPRSRSRSRGRSRSRSHGRSEPSNPGDTLYVTGLSSRVTERNLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDADRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGYRGDQGRYRDGPDRYDYSHRRSPRRSPYRGGQDYSPRRSPYGGRSRRDRSRSLPYSPHGSPDRKYARGSR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02263 230 CDD RRM_SF 63 135 - -
Pumo4g02263 230 SUPERFAMILY RNA-binding domain, RBD 56 169 IPR035979 GO:0003676
Pumo4g02263 230 MobiDBLite consensus disorder prediction 22 48 - -
Pumo4g02263 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 132 IPR000504 GO:0003723
Pumo4g02263 230 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 55 214 - -
Pumo4g02263 230 Gene3D - 7 145 IPR012677 -
Pumo4g02263 230 MobiDBLite consensus disorder prediction 1 21 - -
Pumo4g02263 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 139 IPR000504 GO:0003723
Pumo4g02263 230 MobiDBLite consensus disorder prediction 1 65 - -
Pumo4g02263 230 MobiDBLite consensus disorder prediction 137 230 - -
Pumo4g02263 230 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 145 - -
Pumo4g02263 230 MobiDBLite consensus disorder prediction 160 187 - -
Pumo4g02263 230 SMART rrm1_1 62 135 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02263 Pumo-Chr4 33883322 33886379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02263 60 143 Eukaryotic Initiation Factors Gene Family AT1G49760 34.524 8.39e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02263 K12897 - gmx:100499944 321.627