Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02261 ATGGAGTTTGTGCCAAATCAATGTCCTTTGATGGGTTCCTTCGGGAATTTCGTTGAGAGGGTCAAAAGGGCTGGTACCCTTTTCGTCTCTGCCATCATTGGGAACATCTTCTCTGCGATCTTGACCTTCTGCTTTGCATTAGTTGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGCTTCATTCGAGGGGCTGCTATTGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGATTGATGTTATTGCTAGCCTATTGAGTGGGAGACTAGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGTTGCTGTTGAAATGAGCTTTGATGAGGTTCAAAACCTCTTTGACATTGGTGGCGCCAAAGGTTTACCGAGAGATTCGGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAACAATGTTGATGCTTCTGGGGAGGGAATTTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGGGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATGTTTCACCTACTTTGCATTGATAAGTGGCTGATCAAGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 696 0.4497 MEFVPNQCPLMGSFGNFVERVKRAGTLFVSAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLVLWKSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMVAVEMSFDEVQNLFDIGGAKGLPRDSVEKIPKITITSDNNVDASGEGISCSVCLQDFQLGETGRSLPHCHHMFHLLCIDKWLIKHGSCPLCRRDL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02261 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 231 IPR013083 -
Pumo4g02261 231 SUPERFAMILY RING/U-box 180 231 - -
Pumo4g02261 231 SMART ring_2 186 227 IPR001841 -
Pumo4g02261 231 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Pumo4g02261 231 Pfam YMGG-like Gly-zipper 45 81 IPR027367 -
Pumo4g02261 231 Pfam Ring finger domain 185 228 IPR001841 -
Pumo4g02261 231 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 230 IPR044523 -
Pumo4g02261 231 FunFam NEP1-interacting protein-like 1 146 231 - -
Pumo4g02261 231 CDD RING-H2_NIPL1-like 185 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02261 Pumo-Chr4 33817208 33819198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02261 18 231 C3H Transcription Factor Family AT5G66070 73.364 3.34e-110 314