Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02259 ATGAAAAATAGGAGTGGATCTTCACATAAGATGTTGCTGGAATTTATTGCTGGCATTTTAACAACAATTGTTGGGGCCTTACTCTATTGCCTCTTCAGGAGAAAGGTCATTCCATTTCTTAAGAAACGAAAGACTTTGAAAGGAAAGGAACATGATAAAATATCATTAAGGTATTTTGATTTTAAGGAACTAGAGAGAGCAACCAAAAATTTTAGCCTAGATTGCTTGCTGGGTTCTGGTGCATTTGGAAATGTCTACAAAGGAACCTTTGACTTAGAAGGAACACTAGCCATTAAGAGAGCTCATTCTGAATCATTCTCAAGTGTGGAAGAATTCAGAAATGAAGTTAGGCTCCTTTCAGCTGTAAGGCACAGGAATCTTATTGGTCTGATTGGATATTGTGAAGAACCAGAACGACATGGAGCCAAAATACTAGTCTATGAATATGTTCCAAATGGTTCACTGCTTGAGTACATCATGGGAAACAGAATGAGCTTAACTTGGAAGCAAAGACTAAACATAGCAATAGGAGCAGCAAGAGGCATAGCTTATTTGCATGAAGGGGTGAAGCCAAGCATAATTCACCGTGACGTCAAACCAAGTAATATCCTACTAGGGGAAGGTTTTGAGGCTAAGGTTTCAGATTTTGGGCTAGTAAGATCAGGGCCTACTGGTGATCAGTCACATGTCAGCAGCCAGATTAAAGGAACACCAGGGTACCTTGACCCTGCCTATTGTTCAAGCTTTCATTTGACCAAATTCAGCGACGTTTATAGCTTTGGTGTCATACTTTTGCAACTTGTTTCGGCTAGACCTGTGGTGGATTCCACTGTAAACCAAAGTAATCAACATATTATTGACTGGGCAGGGCCAAGCTTAGAGAAGGGTAGTGTTGAAGAAATCATTGATGCAAATCTATTATGTCAAAGTGAGGCATGCAACATGGAAGCTATGCTAAAGATGGGGCAACTTGGTTTAAGATGTGTGGTTGAAGAACCAAAACATCGCCCAACAATGACCCAGGTGTGTCAAGAACTAGAGCAAGCCCTCTACTCAGCTGATAGCTTCAATAACATGCAGTCTTCAAAGGGATTCCTTAGACCAATTGGCTTATCCCAGCAATCAACAAAGTCAGAGACTCGGGGATCAGTTGAATCATACTATTGTTCACAAAGCTTTGTTAGTATTGACAGTGTTGGATTAGAGAAATTCCGTGTTGATATGGATAGTTTCTCCTTTAAGAGCACAGACTTAAGGTGCCTAGAAAATAATAGTATTAGTATTGACATGGATAGAATATAA 1302 0.3986 MKNRSGSSHKMLLEFIAGILTTIVGALLYCLFRRKVIPFLKKRKTLKGKEHDKISLRYFDFKELERATKNFSLDCLLGSGAFGNVYKGTFDLEGTLAIKRAHSESFSSVEEFRNEVRLLSAVRHRNLIGLIGYCEEPERHGAKILVYEYVPNGSLLEYIMGNRMSLTWKQRLNIAIGAARGIAYLHEGVKPSIIHRDVKPSNILLGEGFEAKVSDFGLVRSGPTGDQSHVSSQIKGTPGYLDPAYCSSFHLTKFSDVYSFGVILLQLVSARPVVDSTVNQSNQHIIDWAGPSLEKGSVEEIIDANLLCQSEACNMEAMLKMGQLGLRCVVEEPKHRPTMTQVCQELEQALYSADSFNNMQSSKGFLRPIGLSQQSTKSETRGSVESYYCSQSFVSIDSVGLEKFRVDMDSFSFKSTDLRCLENNSISIDMDRI 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02259 433 SMART serkin_6 71 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02259 433 Gene3D Phosphorylase Kinase; domain 1 42 149 - -
Pumo4g02259 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Pumo4g02259 433 CDD STKc_IRAK 77 348 - -
Pumo4g02259 433 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 366 - -
Pumo4g02259 433 FunFam Putative LRR receptor-like serine/threonine-protein kinase 41 149 - -
Pumo4g02259 433 ProSiteProfiles Protein kinase domain profile. 71 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02259 433 Pfam Protein tyrosine and serine/threonine kinase 74 346 IPR001245 GO:0004672|GO:0006468
Pumo4g02259 433 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 150 353 - -
Pumo4g02259 433 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Pumo4g02259 433 Gene3D Transferase(Phosphotransferase) domain 1 150 365 - -
Pumo4g02259 433 SUPERFAMILY Protein kinase-like (PK-like) 56 363 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02259 Pumo-Chr4 33717435 33720518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02259 57 357 Receptor kinase-like Gene Family AT2G21480 46.026 1.60e-79 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Pumo4g02259 PK_Tyr_Ser-Thr 5.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02259 - - gmx:100817470 807.749