Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02231 ATGGGTACCAAGTTAAGACACGTTTTTGATGGATTACAGAGTTTTACCACTTGTTGGAAGAAAAGCACCACGCCAACTGGCAGAAGAATTTTCCACAGGGATGTGGAAAAGGAAGAATTCCAGTATGCCAACACTCAATGTCTCTCATCCTACTACAGTGTCTTTGTGGTTCGTCTAGCAATAATGGCCATGCTAGCCATCTTGATTGGTCTTCTCACTTTCCTGACATGGCATTTCACAAAGATTTATACAACAAAATCTCTTAATAGCTTGGCATATGACCTGCGTTATGAACTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTGCTGAAATTACTAATGCTCAGGTTAAGCTGTCTCAGTATGTGATCAGAAGCCACACCAACCTTGCCACTCAAGCAGACCAAGTTGAGATGTATGACGCGATGAGGGCTGTAACATGGGCACTGTTTGCTAGTAAAAAGGCTCTCAATTCAATAACTGTCAAATACAAGAATGGATTTGTCCAAGCATTCCATAGAGACCTGAAGGATAACAATACCTTTTACATTTATTCTGATCTTGCAAATTACTCCATGGCTGCCAGTGGCAACAATGAGATCAATTCGCTTTCAAGGCACGAAGCTTGGAATGATAAAGACATTCATGGTCACAAGCCTGCAATTTGGTATCGCGAACCACTTGATCCCGTCAGTGGTGAGAAGATTGGAAAAGTAATGCCAATTGCACCAGAAGACTCAATCAACATAGCTGGCCTCTCCCAAGTACCTGATGGTGTAGCTTCATGGCATGTTGCTGTGAGCAAGTTTACAGATTCACCATTGCTTTCTGCAGCATTGCCAGTTTGGGACTCTTCTAATAAAAGCATTGTGGCAGTTGTGGGTGTCACAACTGCACTTTACAGTGTGGGGCAGCTCATGAAAGAGCTAGTTGAGTTGCACAGTGGTCACATGTATTTGACCTCCCAAGAGGGTTACTTACTTGCCACTTCCACAAATGCACCTCTACTGTCAAATTCTACCAAGCCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAAATGAAGTAATAAGAGAGGGAGCTCAGTGGCTACAGAAAACCTATGGGAACAATTTCCCTCAAAGTCATGAGCTTCATGTAGAGAATGTCAGGCTAGGCCGCCAACAATATTACATCGACTCATTCTTCCTGAACCTGAAGAGACTTCCTCTGGTAGGTGTAATCATCATACCTAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATACTGACTAATGGAGTATCAAAGGAAATGAAACTTAGAGCAGAACTGATCAGTCACCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTACAAAAGTCAATTTCTTGCAAATATGAGTCATGAATTGAGGACACCAATGGCCGCAGTAATTGGGTTACTTGACATCCTTATATCTGATGACCGTCTCACAAATGAGCAATGTGCAACAGTTACTCAAATAAGAAAATGCTCAACCGCCCTGCTTCGTCTACTTAATAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTTGTCCTAGAAGATGCAGAATTTGATTTGGGGCGGGAACTTGAAGGACTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTTTAGATCTGTCTGATGATATGCCAAAGCTAGTTCGGGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATTAAGTTTACTCTATCGGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTGCAGTGATAATACAAATTTTTCTCTAGAGCAAAAGAAATCACGGGGTTCACAAAAGACCAGAGCAAAGCAACATGAAAACCATGCAAAGAGGACTTCTAATAGAGATAACAAAATGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGTAAATGGGAATCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAACCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGCCCAGGAACACTGATGAGATTATGCTTGCGTCTCAGTGCACCTGTGGATGCCACAGAACAACATTGTCAAGTAGATTTTGCTAACAAGGGCTTAGTGGTACTTCTTGCACTACATGGCAACATGGGTCGATCAGCTACATCTAAGTGGTTACAGAAAAACGGGGTGGTCACTATGGAGGCAGCAGAATGGAATGGATTATCACAAATTCTTAGGGTACTCTTTCATGCAAGAAGTTCAGCTCGTAATAATGGCTTTGATGTAAATTATTCAGTGCATGACAATTTAAAGTCAAAACTACTGAGCATACAGGAATTGAGGAACCCAATTTTTGTCATTGCTGTTGACATTGGGCTACTAGACTTGAGCACAGATATATGGAAAGAACAGCTCAATTTTCTTCACAAATACTTTGGGAGAGCAAAATTCGTGTGGATACTAAACCATGACTCCTCCCATACCATAAAGATGGAGCTTTCCAGGAAAGGACATACATTGACAGTGAACAAACCCCTTTACAAAACAAAAATGATTAATATTTTGGAAGCCATCATAAAGGAGCGAAATGATGAGCTACAAAAGAAAAACATGACTACTCCAAGAGCTACAACGAAAGAGGGCGATTTGCATGAGAGTCTTGAGATTGATTATACTCAATGTGATGTTGCAAGCTCAGATGGTTCTGACATATCCGAAACAGGTGGTTCTAATCCTGTTAGTGCCAATGGAGAAAAACAAAGAGAGAAGGTAGTGAGATCCGATCCATCATCACAACACCAGATAAATAACTTAATTGGATTAACAGATGAAAATATGGAAGATAATAATCCTAGGAAGGAAGAGTTATGTCAGAGCAGCTTCAACTCTAACGATGTCAATGCAAATGCCACACCAAAATCATCCTCCACTAAACAAGCATCCTTTGTGAAAGGTGCTCAAGGTGAAGATTCTGAGTATGGTGAAACGCGAAGGGCAAGTAGCTCAAGTAGAGCAGTGAGTGGAAAGAAATCTCTTGAAGGTCTGAGGATATTGCTTGCAGAAGATACACCAGTAATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCCACTGTTGTAGCGGTAGGTGATGGACAGCAGGCTGTGGATGCTCTAAATGGCATGCCTGGTGTTGAAGATTGTAGAAGGGAATCTCTGCTGAAGGAAAGAAACACAAGATCATCTCAAACTGAGATTCTCAGTTGTGCTCCATATGATTTGATCCTGATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCAGAAGTGGGAACTGGCTTGCATATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAGTGCCTAGAGGTGGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTGATGGAGTCCACCATTCTTTCACTGACAAGAAGGACATCCTAA 3681 0.4148 MGTKLRHVFDGLQSFTTCWKKSTTPTGRRIFHRDVEKEEFQYANTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITNAQVKLSQYVIRSHTNLATQADQVEMYDAMRAVTWALFASKKALNSITVKYKNGFVQAFHRDLKDNNTFYIYSDLANYSMAASGNNEINSLSRHEAWNDKDIHGHKPAIWYREPLDPVSGEKIGKVMPIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSQEGYLLATSTNAPLLSNSTKPPKLKMAVDCENEVIREGAQWLQKTYGNNFPQSHELHVENVRLGRQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSCSDNTNFSLEQKKSRGSQKTRAKQHENHAKRTSNRDNKMILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLCLRLSAPVDATEQHCQVDFANKGLVVLLALHGNMGRSATSKWLQKNGVVTMEAAEWNGLSQILRVLFHARSSARNNGFDVNYSVHDNLKSKLLSIQELRNPIFVIAVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWILNHDSSHTIKMELSRKGHTLTVNKPLYKTKMINILEAIIKERNDELQKKNMTTPRATTKEGDLHESLEIDYTQCDVASSDGSDISETGGSNPVSANGEKQREKVVRSDPSSQHQINNLIGLTDENMEDNNPRKEELCQSSFNSNDVNANATPKSSSTKQASFVKGAQGEDSEYGETRRASSSSRAVSGKKSLEGLRILLAEDTPVIQRVATIMLEKMGATVVAVGDGQQAVDALNGMPGVEDCRRESLLKERNTRSSQTEILSCAPYDLILMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRTS 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02231 1226 MobiDBLite consensus disorder prediction 1015 1044 - -
Pumo4g02231 1226 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Pumo4g02231 1226 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Pumo4g02231 1226 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Pumo4g02231 1226 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Pumo4g02231 1226 MobiDBLite consensus disorder prediction 646 664 - -
Pumo4g02231 1226 SMART REC_2 1075 1218 IPR001789 GO:0000160
Pumo4g02231 1226 Gene3D - 1054 1221 - -
Pumo4g02231 1226 CDD REC_hyHK_CKI1_RcsC-like 1077 1218 - -
Pumo4g02231 1226 SUPERFAMILY CheY-like 1073 1224 IPR011006 -
Pumo4g02231 1226 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Pumo4g02231 1226 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Pumo4g02231 1226 Gene3D - 471 550 - -
Pumo4g02231 1226 MobiDBLite consensus disorder prediction 957 1066 - -
Pumo4g02231 1226 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 745 IPR036890 -
Pumo4g02231 1226 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 746 IPR003594 -
Pumo4g02231 1226 MobiDBLite consensus disorder prediction 638 664 - -
Pumo4g02231 1226 PANTHER TWO-COMPONENT HISTIDINE KINASE 43 756 - -
Pumo4g02231 1226 Gene3D - 551 749 IPR036890 -
Pumo4g02231 1226 ProSiteProfiles Response regulatory domain profile. 1076 1222 IPR001789 GO:0000160
Pumo4g02231 1226 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 470 550 IPR036097 GO:0000155|GO:0007165
Pumo4g02231 1226 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Pumo4g02231 1226 SMART HKATPase_4 596 748 IPR003594 -
Pumo4g02231 1226 FunFam Histidine kinase 1-like protein 471 550 - -
Pumo4g02231 1226 MobiDBLite consensus disorder prediction 989 1004 - -
Pumo4g02231 1226 Pfam Response regulator receiver domain 1140 1215 IPR001789 GO:0000160
Pumo4g02231 1226 MobiDBLite consensus disorder prediction 957 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02231 Pumo-Chr4 32984608 32991752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02231 4 1226 Histidine Kinase Gene Family AT2G17820 63.938 0.0 1561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo4g02231 HATPase_c 2.7e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02231 - - gmx:100801970 2269.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02231 4 32984608 32991752 Pumo4g02231 4 32984608 32991752 ECH