Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02209 ATGGGAACCTGCTTTTCCGCCACCAAAGTCAGCGGCTCCAACGGCAACGCCGTCACCGTCAACAAGAACCGCAAGAAGGGCACCGCCAAGCCGAAATCGGAGACGGTGACGGCGACGGCGAACCCGCAACGGCACAAGGCGAGTTCGCGCCACGTGCCGTGCGGGAAGCGCACCGATTTCGGTTACGAGAAGGATTTCGACAAGCGTTACTCGCTCGGGAAATTGCTCGGACACGGCCAATTCGGCTACACCTACGTCGGAATCGACAAAGCCAATGGCGATCGCGTCGCCGTTAAGAGGCTCGATAAGAGTAAGATGGTTCTGCCTATTGCCGTTGAGGATGTTAAGCGAGAGGTTAAGATATTGAAAGCGCTTGCTGGTCACGAGAATGTGGTTCAGTTCTATAATGCGTTTGAAGATGATTCTTACGTGTACATAGTTATGGAGTTATGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATACTGAAAAAGATGCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGACATGAAACCAGAGAATTTTCTTTTTAAATCAACCAAAAAGGATTCACCTTTAAAGGCCACAGATTTTGGTTTGTCAGATTTCATTAAACCTGGGAAGAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGTTAAAACGCAAGTCAGGCCCTCAATCAGATGTGTGGAGTATTGGTGTTATTACATACATATTGCTGTGTGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGTAAGAAGCCCGATTTCCGTCGGAAACCATGGCCAACTATAAGTAATGCTGCAAAAGATTTTGTGAAAAAATTACTGGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCTAGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATATATCTGTCCTGAGCAACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTAAGGGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATCTAAAAGATCAATTTGATGCTATAGATGTGGACAAAAATGGTTCTATTAGCCTGGAAGAGATGAGACAGGCTCTTGCCAAAGATCTTCCTTGGAAATTGAAAGAATCACGTGTACTGGAGATATTGCAAGCGATAGACAGCAACACTGATGGCCTAGTGGATTTCCGTGAGTTTGTAGCAGCTACATTACATGTGCATCAATTGGAGGAAGACTCTGACAAGTGGCAGCAACGGTCACAAGCTGCTTTTGAGAAATTTGACATAGATAAAGATGGCTATATTACTCCGGAGGAACTTAGAATGCATACAGGCTTGAGAGGCTCCCTTGATCCTTTGCTCGAGGAAGCTGATATTGACAAAGATGGAAAAATAAGCCTACTAGAGTTTCGTAGACTTCTAAGAACTGCAAGCATGGGTTCTCAACAAGTTTCAAGCCCAACTGTTAATCGGCAGAGGAGGATCTAG 1596 0.4555 MGTCFSATKVSGSNGNAVTVNKNRKKGTAKPKSETVTATANPQRHKASSRHVPCGKRTDFGYEKDFDKRYSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLDKSKMVLPIAVEDVKREVKILKALAGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKKDSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRKKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAALALSHPWVREGGEALEIPIDISVLSNMRQFVKYSRFKQFALRALASTLNEEELADLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFREFVAATLHVHQLEEDSDKWQQRSQAAFEKFDIDKDGYITPEELRMHTGLRGSLDPLLEEADIDKDGKISLLEFRRLLRTASMGSQQVSSPTVNRQRRI 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02209 531 ProSiteProfiles EF-hand calcium-binding domain profile. 451 486 IPR002048 GO:0005509
Pumo4g02209 531 SUPERFAMILY Protein kinase-like (PK-like) 56 363 IPR011009 -
Pumo4g02209 531 Gene3D Transferase(Phosphotransferase) domain 1 156 349 - -
Pumo4g02209 531 Pfam Protein kinase domain 70 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02209 531 MobiDBLite consensus disorder prediction 1 23 - -
Pumo4g02209 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Pumo4g02209 531 FunFam calcium-dependent protein kinase 28-like 156 349 - -
Pumo4g02209 531 ProSitePatterns EF-hand calcium-binding domain. 423 435 IPR018247 -
Pumo4g02209 531 SMART efh_1 414 442 IPR002048 GO:0005509
Pumo4g02209 531 SMART efh_1 455 483 IPR002048 GO:0005509
Pumo4g02209 531 SMART efh_1 485 513 IPR002048 GO:0005509
Pumo4g02209 531 SMART efh_1 377 405 IPR002048 GO:0005509
Pumo4g02209 531 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Pumo4g02209 531 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Pumo4g02209 531 Gene3D Phosphorylase Kinase; domain 1 63 155 - -
Pumo4g02209 531 Gene3D - 350 509 - -
Pumo4g02209 531 ProSiteProfiles EF-hand calcium-binding domain profile. 489 516 IPR002048 GO:0005509
Pumo4g02209 531 CDD STKc_CAMK 69 329 - -
Pumo4g02209 531 PANTHER SERINE/THREONINE-PROTEIN KINASE 48 502 - -
Pumo4g02209 531 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Pumo4g02209 531 FunFam CDPK-related kinase 1 63 155 - -
Pumo4g02209 531 Gene3D - 371 440 - -
Pumo4g02209 531 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Pumo4g02209 531 MobiDBLite consensus disorder prediction 1 54 - -
Pumo4g02209 531 ProSiteProfiles Protein kinase domain profile. 70 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02209 531 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Pumo4g02209 531 MobiDBLite consensus disorder prediction 32 46 - -
Pumo4g02209 531 FunFam Calcium-dependent protein kinase 28 371 440 - -
Pumo4g02209 531 SMART serkin_6 70 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02209 531 Pfam EF-hand domain pair 377 439 IPR002048 GO:0005509
Pumo4g02209 531 Pfam EF-hand domain pair 457 510 IPR002048 GO:0005509
Pumo4g02209 531 SUPERFAMILY EF-hand 360 512 IPR011992 -
Pumo4g02209 531 ProSiteProfiles EF-hand calcium-binding domain profile. 410 445 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02209 Pumo-Chr4 32533023 32538845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02209 1 523 EF-hand Containing Proteins AT2G17890 76.335 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo4g02209 Pkinase 5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02209 K13412 - gmx:100798941 1001.89