Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02191 ATGTCACATTCTAGTATTAATGAACCTAATGATTTGCCCCCTGGGTTTGAAGGCAGTCATTTCCTAAACCAATCGAGGGTTGAAGCCTCCAAGATTCCCCTGATAAAATGGGAATGCCCTCTGCCGTTTGTTGTCAGATCTCAATGGCGTGTTGCAGCGGGTAAAGAAAGTAGGGAGAAAGAGAATCAGAAACTGAGAGAAATGAGAGTGCTTGAAGCAGTTTATCCCCGTCTTTCTGCCATTCCTCCTAGCCCTTCTGTCTCTTTGGATGTAGTAGAGGAAGACTATGATGATGATATTACTCCTCTCATCCCTATCATTCCCATTGAAGAGGAAGAATCTAAGGATATTTTGCCTGAATCGGCAGTAGCAGTGAAATCTTTCCCCAATGTGCAGTCACAGAACTCTCAGCAATATATATCTGCAAAAACTTCCGTTAGTTCAGCCTCTAACACCTCTCATACAGTTTCCTTGGATCCCTGTATAATGCCCTTGGCTGGGGTATCTTCTGGTTTCGAAGCCGATGTAGCAGTAGCCTCTTCGGTTGCTGCAACCATTTTGAGGAGTAATGAGCAAGGAGGCCTGATTGATATGGATTTGCTGCTTAAAATATTTACTGATCCAAAATTACTTGAGAAGTTGATTAATGAACGTCGAACTGCAGCTACCACCGCAAGTGCTTCCTCAAATACAGTGGATATACCCACTTCTGGTGTGAAGCCTGCTATTCCATCAGCTCTGTTGTCTACATCTACACCTGATGTGACAGCTTCTGGGACTACACCCACGAGTGCAGTGCGTCCATTGCCTTCTGTGTTGAAGCCTGCAAATCCATCAGTTTCATTATCGAATCCTACACCTGATAAGCCAGTCACTCTGTCAGCGCCCGCAATTCCATCAGTTTCACTATTGTCTTCTACACATGATAAACCTGTGACTGCACCAGTTCCATTGTCCAGACCTGTATCTGGTAAGCCAGTAACTCCCTCAGTTTCATTGCTTACACCTGCTCCTGATATGCACAGGTCTGTCAGCAAAAATTTTCACCATGTGTCTAGTGGAATGCCCCCTGCTTTAAATACCCAGTCTCAGCAAGAGACGGTCACAGCTCTGGCATCTGGGCCAAAGCGAGCTGCACCTGTGGCGCCCATATCTTATAGTGAATCAAGCCCTGGTCCATTGCCATCCACTACTGGGAACTTGCATGCAGTCGTGAATCAGGCGCAGTCCGCCACAAGTACAATGCCTTATAAACTAAGTACAGGTTCAGCATTTGCTGTAAAGGATGCCAACTACTATAAAAACCTCATCAGGCAACATGGTGCAGATAAGCAAGATATCCAGGACTCACACATAGGTATCCGTCATAGTAACTTCCAAGATATGAAACCGGTACATAACATTAATCAAGGAGAAGTGAAACACAAAATCCAGAAACCTTGCATATATTTTAAAAGCTCAAGGGGGTGCCGAAATGGCTCCAATTGCCCCTATCAGCATGATGTTTCAGCTCAGTGGGGAGCTGGTAACGTCTTAGGGGCACAGAGTGCAAAAAGATTGAAATTGGGAGGGGATAACTAA 1581 0.451 MSHSSINEPNDLPPGFEGSHFLNQSRVEASKIPLIKWECPLPFVVRSQWRVAAGKESREKENQKLREMRVLEAVYPRLSAIPPSPSVSLDVVEEDYDDDITPLIPIIPIEEEESKDILPESAVAVKSFPNVQSQNSQQYISAKTSVSSASNTSHTVSLDPCIMPLAGVSSGFEADVAVASSVAATILRSNEQGGLIDMDLLLKIFTDPKLLEKLINERRTAATTASASSNTVDIPTSGVKPAIPSALLSTSTPDVTASGTTPTSAVRPLPSVLKPANPSVSLSNPTPDKPVTLSAPAIPSVSLLSSTHDKPVTAPVPLSRPVSGKPVTPSVSLLTPAPDMHRSVSKNFHHVSSGMPPALNTQSQQETVTALASGPKRAAPVAPISYSESSPGPLPSTTGNLHAVVNQAQSATSTMPYKLSTGSAFAVKDANYYKNLIRQHGADKQDIQDSHIGIRHSNFQDMKPVHNINQGEVKHKIQKPCIYFKSSRGCRNGSNCPYQHDVSAQWGAGNVLGAQSAKRLKLGGDN 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02191 526 ProSiteProfiles Zinc finger C3H1-type profile. 476 503 IPR000571 GO:0046872
Pumo4g02191 526 MobiDBLite consensus disorder prediction 249 267 - -
Pumo4g02191 526 MobiDBLite consensus disorder prediction 276 290 - -
Pumo4g02191 526 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 7 525 - -
Pumo4g02191 526 MobiDBLite consensus disorder prediction 249 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02191 Pumo-Chr4 32294216 32298038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02191 24 124 Homeobox Transcription Factor Family AT4G02560 37.500 6.76e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo4g02191 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02191 - - gmx:102661587 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02191 4 32294216 32298038 Pumo4g02191 4 32294216 32298038 ECH