Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02189 ATGGAAGTGGATGAACCTGTTGTTGAAAAGGTTTGCGAATCCGTGGAAAAGGGAAATGATGTAATGGAAGCGGAAGGAAGTGCTTCCCAGGATGCTTCTGTTTCTTTTAAGCGACCAGATCGGCCCATTATGGATCTCAATATATCCGCAGATAATGAAGATTGTACTGGTGAAAAGGACGGAGAGAAAACAAAGGAAGAGTTGAAAGAACAGGAAGGCGACGAAAGGAAGGAAGAGGTGAAAGAACAGGAAGGAGATGAAGGGAAGGAAGAGGTGAAAGAACAGGAAGGAGAGAAAGGAAAGGAAGAGTTGAAAGAACTGGATGAAGAGAAAGGTAAGGAAGAGTTGAAAGAACTGGATGGAGAGAAACGTAAGGAAGAATTGAAAGAACAGGAAGGAGAGAAAGCTGAGGAAGGAGAGAAAGGTAAGGAAGAGTTGACAGAACAGGAAGGACAGAAAGGAAAGGTTGAGTTGAAAGAACAGGAAGTAGACAAAGGAAAGGAAAAGTTGAAAGAGCAGGAACCAGAGAAAGCAAAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACACCGAGTCTTTTGGTGTAGAAGTGAAAGCCCAGATGCAAAAAGAAGATGCTAATCCCATTAAAGATGGTGGTGAAGGACCAAAGAGTGGTGAAAAGTCAGATCTTGTAGAACAAGGGAGGGTGGAGCTTGTTGAAGAGGATTCGGAGGAAGATCCAGAGGAAGATCCAGAAGAAGATCCAGAAGAAGATCCAGAGGAACCTACAGAAGAAACTTTGGCATTGGAGGAGCATAGGGAATTGGCATTGGAGGAGCATAGGGAATTGGAGGCTATTGCAAATCAGCGAAAGATTAAAAAGGAACATGAGATTTTTGTTGGTGGATTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGATAGTTGAAGTCAGGTTGCATAAGAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGTAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACATGGACCAAAGAAGCTATTAAACAGAAGCTGAAGGATTATGGTATTGAAGGGGTTGAAAACATTACGCTTGTCCCAGATGCTCAACATGAGGGCTTGAGCCGGGGCTTTGCATTCCTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCTGATGTTATCTTTGGCCATGCTGAGCGAACTGCTAAGGTAGCCTTTGCTGAACCCATACGTGAACCAGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACATTGGGAGGAAAATCATGTGAGGGAGCTGTTTAAACCTTATGGTGAAATTGTAAGAATTGTGCTAGCACGGAATATGTCTACAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACACGAAGCAGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAATTGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAATCCTCTGCCTAAAACACAGGCTGTAAAAGGTGGTATGTGTGGTGGGTTCCGAATAGGTCATGCTAGGAGTGGAGCCTTTTCAAGATCAGGAAGGGGGTTTGGGCGGGGAAGACAGTCCTTCAACAACAGGGGACATTTCAACAGGGACAGGAGTTTCTATCATGGTGGACATAGTCAAATTGGAAGAATGGGTTTTCGGGATGGCCTTGATTTTAATATGCATCCGGATTTCCATCAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGGGGACATTATGCAGGTAGCCGAGGTGCTGCATTTGCTGGACCATCTAGACCTTATCATGATAGAACATGGTATGGTATCCCTGATGGAGGCCCTAGTGAGCCTATTCCTCCAAGGAGGCCCTACTCCCCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGGCACTTTGATGATCCATATTTATATGATGACAATATGCATGGAATGAAACGTCCATTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGTCCCCGATTGGATTATGCAGATCCACCTATATTTCATGGAAATCGTCATCATGATTCTTATGGGCCTGGCAGCAGACAGTACCCGCCTGACTATTACGGTTCTGATGTGAGTTAA 2304 0.4366 MEVDEPVVEKVCESVEKGNDVMEAEGSASQDASVSFKRPDRPIMDLNISADNEDCTGEKDGEKTKEELKEQEGDERKEEVKEQEGDEGKEEVKEQEGEKGKEELKELDEEKGKEELKELDGEKRKEELKEQEGEKAEEGEKGKEELTEQEGQKGKVELKEQEVDKGKEKLKEQEPEKAKGEETNLFGHEENTESFGVEVKAQMQKEDANPIKDGGEGPKSGEKSDLVEQGRVELVEEDSEEDPEEDPEEDPEEDPEEPTEETLALEEHRELALEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENITLVPDAQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWEENHVRELFKPYGEIVRIVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSGAFSRSGRGFGRGRQSFNNRGHFNRDRSFYHGGHSQIGRMGFRDGLDFNMHPDFHQRQFGPQGAVRGGHYAGSRGAAFAGPSRPYHDRTWYGIPDGGPSEPIPPRRPYSPGGQFDMPFMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGNRHHDSYGPGSRQYPPDYYGSDVS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02189 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 470 550 IPR000504 GO:0003723
Pumo4g02189 767 CDD RRM_SF 472 546 - -
Pumo4g02189 767 MobiDBLite consensus disorder prediction 52 188 - -
Pumo4g02189 767 SUPERFAMILY RNA-binding domain, RBD 462 575 IPR035979 GO:0003676
Pumo4g02189 767 Gene3D - 459 613 IPR012677 -
Pumo4g02189 767 CDD RRM_SF 374 437 - -
Pumo4g02189 767 FunFam Heterogeneous nuclear ribonucleoprotein Q 457 608 - -
Pumo4g02189 767 MobiDBLite consensus disorder prediction 205 233 - -
Pumo4g02189 767 MobiDBLite consensus disorder prediction 16 265 - -
Pumo4g02189 767 SUPERFAMILY RNA-binding domain, RBD 293 437 IPR035979 GO:0003676
Pumo4g02189 767 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 72 752 - -
Pumo4g02189 767 SMART rrm1_1 373 450 IPR000504 GO:0003723
Pumo4g02189 767 SMART rrm1_1 471 546 IPR000504 GO:0003723
Pumo4g02189 767 SMART rrm1_1 293 366 IPR000504 GO:0003723
Pumo4g02189 767 MobiDBLite consensus disorder prediction 234 261 - -
Pumo4g02189 767 FunFam Heterogeneous nuclear ribonucleoprotein Q 372 456 - -
Pumo4g02189 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 370 IPR000504 GO:0003723
Pumo4g02189 767 Coils Coil 90 149 - -
Pumo4g02189 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 374 442 IPR000504 GO:0003723
Pumo4g02189 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 362 IPR000504 GO:0003723
Pumo4g02189 767 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 472 538 IPR000504 GO:0003723
Pumo4g02189 767 Coils Coil 265 285 - -
Pumo4g02189 767 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 372 457 IPR000504 GO:0003723
Pumo4g02189 767 CDD RRM_SF 294 363 - -
Pumo4g02189 767 MobiDBLite consensus disorder prediction 727 767 - -
Pumo4g02189 767 Gene3D - 219 368 IPR012677 -
Pumo4g02189 767 Gene3D - 371 456 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02189 Pumo-Chr4 32278995 32284212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02189 293 538 Eukaryotic Initiation Factors Gene Family AT2G23350 23.715 1.81e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02189 - - gmx:100784338 1087.79