Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02188 ATGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCAACAGATGAAGAGCTCGTGGGTTATTATCTGAGGAAGAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAGATCGACCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATTGGGTATGAGGAGCAGAATGAATGGTATTTCTTTAGCCACAAAGATAAGAAGTATCCAACTGGGACAAGAACCAACAGAGCTACCATGGCAGGGTTTTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAGAGGACCAAACTCATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACCGATTGGATCATGCACGAGTATAGGCTTGAAACTCTTGAAAATGGACCTCCACAGGAGGAAGGATGGGTGGTGTGCAGAGCATTCAAGAAAAGAACTAACTGCCAAACAAAGACTATTGAAGGATGGGACCGAAGTTGCTTATACGATGAACAAACAAGCAGTGGTGTCAGCTCTATGGTGGACCCTATTGACCATATCTTAAGGCAACAACCTCAGAGGTTTTCACCTCAGAATTTCATGTACATGCAAGAGATCATAGAAGCAGATAATAATTTGAGCTTCATGCATGCAGAACAATTGGTGCAGATTCCTCAGCTAGAAAGTCCTTCTTTGCCATTAGTAAAGAATAAGCAAAGCTCATCAGTGTCCCTAATATCAGAAAATATTATTAATAACGAAGATGATTCTCAAAAGGGTTTATGCAACACAAAGAAAGTGACTGATTGGAGAGCTCTTGACAAGTTTGTGGCCTCTCAGTTGAGTCAAGAAGAGAGGCATGACATAGAATTTGCAACTCACACTAGCTCGGACATGGCATTGCTTCTACTTCAGAATAATAGAGAAAATGAGAGGAACAAGTTCAACCCGTTTTTAAATACAAGCTCATCAGACTGTGACATTGGGATATGCGTATTTGAAAAATGA 1020 0.4186 MMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETLENGPPQEEGWVVCRAFKKRTNCQTKTIEGWDRSCLYDEQTSSGVSSMVDPIDHILRQQPQRFSPQNFMYMQEIIEADNNLSFMHAEQLVQIPQLESPSLPLVKNKQSSSVSLISENIINNEDDSQKGLCNTKKVTDWRALDKFVASQLSQEERHDIEFATHTSSDMALLLLQNNRENERNKFNPFLNTSSSDCDIGICVFEK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02188 339 FunFam NAC domain-containing protein 15 159 - -
Pumo4g02188 339 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Pumo4g02188 339 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Pumo4g02188 339 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 251 - -
Pumo4g02188 339 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Pumo4g02188 339 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02188 Pumo-Chr4 32246370 32250143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02188 2 338 NAC Transcription Factor Family AT2G18060 60.274 4.52e-149 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g02188 NAM 4.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02188 - - gmx:100803726 556.984