Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02184 ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCCGCAGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTATGCCGTGCCTGTGATGAGAAGGTTCACATGTGTAATAAGCTAGCTAGCCGGCATGTAAGGGTTGGTCTAGCAAGTCCAAGTGATGTGCCGCGCTGTGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATGGTTCATGTTGGAGGTAAAAGGACACATGGAAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAACCTGGTATGGCAGAAAACCCAGCCTCACAACCTCTGGATCCGGGTGAGACTAAAAGAGGACAAAATCCAATGCCCAAAATGAAAACAGGAGAAAAACAGCAAAATCACAGGATGCCTCTGGTTCCAACACCAGAACCTGATGCTGATGGCCATGTCATGATGGAAACCAAAATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAACCAACCTCAAATACTCAGGAAAATAAAGCAAAACGCATACATTGA 576 0.4497 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMMVHVGGKRTHGRYLLFRQRVEFPGDKPGMAENPASQPLDPGETKRGQNPMPKMKTGEKQQNHRMPLVPTPEPDADGHVMMETKMIDLNMKPQRIHEPTSNTQENKAKRIH 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02184 191 Gene3D Classic Zinc Finger 2 91 - -
Pumo4g02184 191 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Pumo4g02184 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 157 - -
Pumo4g02184 191 MobiDBLite consensus disorder prediction 169 191 - -
Pumo4g02184 191 MobiDBLite consensus disorder prediction 105 157 - -
Pumo4g02184 191 SMART bboxneu5 51 96 IPR000315 GO:0008270
Pumo4g02184 191 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pumo4g02184 191 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Pumo4g02184 191 CDD Bbox1_BBX-like 56 96 - -
Pumo4g02184 191 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pumo4g02184 191 CDD Bbox1_BBX-like 4 47 - -
Pumo4g02184 191 FunFam B-box zinc finger protein 19 2 92 - -
Pumo4g02184 191 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Pumo4g02184 191 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02184 Pumo-Chr4 32074252 32080446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02184 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.202 4.80e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pumo4g02184 zf-B_box 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02184 - - vun:114176173 357.451