Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02173 ATGAAAGAGGCACATTTCAGCCATTATTCAATGCTTTACCAAACTCACCATCCTCCTCCACTCTTTCAATTTCATCCCTTCACTTCTTCCACCACCCCTCACCTTTCCACAATACCATCATCATCTCTACCTTCTCTTCTTCTCTCTCAGGCGGAAAAGGAAATGGAGTGTTTGGAAGCAGCGTTGAAGAGCAGTTTTAGGAAAGACATGGCTCTCAAACTCAGCCCCCAAACGTTCCTAGAGGACTTGTCCGCGTTTACCGTTCAAAACGTCGTCGCTTCTTCCGACGACTTCTTCGTTGACGACCTCCTCGACTTTTCACTCCTCGAAAACAACGAAGAACCCGACCAACACAACAACCACGACTCAACCTCTGTTTCCCCTCACAAGGACAAAAATTACAATTACAATTACAACCCCTCCTTCAACAACGACAACAATTTCAACAGCGAACTCACTGTTCCGGCGGAGGAAGAAGTTGCGGACTTGGAATGGTTGTCTAATTTTGTGGAAGATTCTTTCACGGAATACTCTCTTCCCTTCCCCGCAACGGTAACGGAGAAAGCAGCACCGGAACCAGGAAATACCGGTTTTACTTTTAAAACGCCGGTTCCGGCGAAGGCGAGAAGCAAGCGAGCGCGAACCGGTGTCCGGGTTTGGCCACTCAAGTCATCCTCTTTCACCGCCACGTCATCAACCTCGACAACAACAACAACCTCGTCCTCTTCCTCGTCCTCGCCCTCGCCCTCGAGCCCGATGCTAATTTGCGCCGCGGCGACAAGAGACCTCGACGCGGAGGAGAAGAGGGTGAAGAAACGCGCCGCGGTTGACGGCGGTGCGGCGCGGAGGTGCAGCCATTGCGGCGTTCAGAAAACCCCCCAGTGGCGAACCGGACCGCTCGGGGCGAAGACTCTGTGCAACGCGTGTGGGGTCCGCTACAAGTCGGGTCGGTTATTGCCCGAATATAGACCTGCATGCAGCCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTCTGGAGATGCGGCGGAATAAAGAGGTCGCCGCTGAACCGGACACCGGTTCGCCACAGTCAGTTTCCGGTTTTTGA 1101 0.5313 MKEAHFSHYSMLYQTHHPPPLFQFHPFTSSTTPHLSTIPSSSLPSLLLSQAEKEMECLEAALKSSFRKDMALKLSPQTFLEDLSAFTVQNVVASSDDFFVDDLLDFSLLENNEEPDQHNNHDSTSVSPHKDKNYNYNYNPSFNNDNNFNSELTVPAEEEVADLEWLSNFVEDSFTEYSLPFPATVTEKAAPEPGNTGFTFKTPVPAKARSKRARTGVRVWPLKSSSFTATSSTSTTTTTSSSSSSSPSPSSPMLICAAATRDLDAEEKRVKKRAAVDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRNKEVAAEPDTGSPQSVSGF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02173 366 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 276 340 - -
Pumo4g02173 366 MobiDBLite consensus disorder prediction 112 135 - -
Pumo4g02173 366 SMART GATA_3 278 332 IPR000679 GO:0006355|GO:0043565
Pumo4g02173 366 FunFam GATA transcription factor 274 359 - -
Pumo4g02173 366 MobiDBLite consensus disorder prediction 188 253 - -
Pumo4g02173 366 Coils Coil 48 68 - -
Pumo4g02173 366 ProSiteProfiles GATA-type zinc finger domain profile. 278 314 IPR000679 GO:0006355|GO:0043565
Pumo4g02173 366 ProSitePatterns GATA-type zinc finger domain. 284 309 IPR000679 GO:0006355|GO:0043565
Pumo4g02173 366 CDD ZnF_GATA 283 331 IPR000679 GO:0006355|GO:0043565
Pumo4g02173 366 Gene3D - 277 351 IPR013088 GO:0006355|GO:0008270
Pumo4g02173 366 PANTHER GATA TRANSCRIPTION FACTOR 93 362 - -
Pumo4g02173 366 MobiDBLite consensus disorder prediction 112 128 - -
Pumo4g02173 366 MobiDBLite consensus disorder prediction 221 253 - -
Pumo4g02173 366 Pfam GATA zinc finger 284 318 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02173 Pumo-Chr4 31722927 31724397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02173 59 366 C2C2-Gata Transcription Factor Family AT5G66320 51.471 1.15e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo4g02173 GATA 5.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02173 - - pvu:PHAVU_003G258900g 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02173 4 31722927 31724397 Pumo4g02173 4 31722927 31724397 ECH