Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo4g02164 | ATGGCGGGGTTATTCTCATTAGGCGGAGGGAGAGGCAGCAACAACAACAACCAACAAGATAACAACAACCAGAGCGAGATTCCCCCAGCGGAGACCCTATTCTGGTACAGCAAAAACGACGACGTTTCGTCCTACCACCACCGAGGGTTTGAGCTATGGAACCAACAGGAGCAGCACGTGATGCAGCATCATCCGCATGCGCGTCCCCTCCTGCAGCGAGATCTTTACTCCTCCGGCGTGGGGCCCAGCAGGGGCGTCTCCGATGATCACTCGTCGTCGAGATCGGCCTTCGTGGCGATGCGCGTGGCGGAGGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCCAAGAAAGACTGCCCTCACATGCGGTGCAGGACGTGCTGCAAGAGCCGCGGCTACGAGTGCCAAACCCATGTGAAAAGCACATGGGTTCCGGCTTCTAAACGCCGCGAGCGTCAGCAGACACTCGCGGCGTTACAGGAGCAGCAGCAACAACAACAGAGAGACATTTCCAAACGGCCGAGAGACCCGACCGCTTGCACTCGCTTGCCCTCGTCGTCAGGGTTAGAGGAAGGGCATTTTCCTGCTTTGGTGAGTTCTCCTGCGGAGTTCAGGTGCGTGAGGGTTACCTGTGTGGAGGACGCTGATGATAGGTATGCATATCAAACGGCTGTGAACATTGGAGGACATGTGTTCAAAGGAATCCTCTATGACTATGGTCCTGAGAGTGGCAACAATAATAATAACAGTAATAATAGCAATAATAATTACATGGCTGGGGAAACCTCTGCTGGTGTTGCTGGAGCTGCTCAGCCCTTGAACCTCACTGCTTCTGCTGCACTTGTTGATCCTTCCTCCTTGTATCCGGTTAACACTTTCATGGCGGGTAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA | 927 | 0.5415 | MAGLFSLGGGRGSNNNNQQDNNNQSEIPPAETLFWYSKNDDVSSYHHRGFELWNQQEQHVMQHHPHARPLLQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRVAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQTLAALQEQQQQQQRDISKRPRDPTACTRLPSSSGLEEGHFPALVSSPAEFRCVRVTCVEDADDRYAYQTAVNIGGHVFKGILYDYGPESGNNNNNSNNSNNNYMAGETSAGVAGAAQPLNLTASAALVDPSSLYPVNTFMAGSGTQFFPHTRS | 308 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo4g02164 | 308 | MobiDBLite | consensus disorder prediction | 158 | 188 | - | - | |
Pumo4g02164 | 308 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Pumo4g02164 | 308 | Pfam | Domain of unknown function (DUF702) | 106 | 243 | - | - | |
Pumo4g02164 | 308 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 291 | IPR007818 | GO:0003700|GO:0006355 | |
Pumo4g02164 | 308 | MobiDBLite | consensus disorder prediction | 9 | 26 | - | - | |
Pumo4g02164 | 308 | Coils | Coil | 150 | 170 | - | - | |
Pumo4g02164 | 308 | NCBIfam | LRP1 C-terminal domain | 194 | 242 | IPR006511 | - | |
Pumo4g02164 | 308 | NCBIfam | putative zinc finger domain, LRP1 type | 108 | 150 | IPR006510 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo4g02164 | Pumo-Chr4 | 31531493 | 31534277 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo4g02164 | 1 | 308 | C2H2 Transcription Factor Family | AT3G51060 | 44.415 | 3.72e-77 | 238 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SRS | Pumo4g02164 | DUF702 | 1.1e-63 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo4g02164 | - | - | gmx:100789129 | 449.514 |