Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02164 ATGGCGGGGTTATTCTCATTAGGCGGAGGGAGAGGCAGCAACAACAACAACCAACAAGATAACAACAACCAGAGCGAGATTCCCCCAGCGGAGACCCTATTCTGGTACAGCAAAAACGACGACGTTTCGTCCTACCACCACCGAGGGTTTGAGCTATGGAACCAACAGGAGCAGCACGTGATGCAGCATCATCCGCATGCGCGTCCCCTCCTGCAGCGAGATCTTTACTCCTCCGGCGTGGGGCCCAGCAGGGGCGTCTCCGATGATCACTCGTCGTCGAGATCGGCCTTCGTGGCGATGCGCGTGGCGGAGGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCCAAGAAAGACTGCCCTCACATGCGGTGCAGGACGTGCTGCAAGAGCCGCGGCTACGAGTGCCAAACCCATGTGAAAAGCACATGGGTTCCGGCTTCTAAACGCCGCGAGCGTCAGCAGACACTCGCGGCGTTACAGGAGCAGCAGCAACAACAACAGAGAGACATTTCCAAACGGCCGAGAGACCCGACCGCTTGCACTCGCTTGCCCTCGTCGTCAGGGTTAGAGGAAGGGCATTTTCCTGCTTTGGTGAGTTCTCCTGCGGAGTTCAGGTGCGTGAGGGTTACCTGTGTGGAGGACGCTGATGATAGGTATGCATATCAAACGGCTGTGAACATTGGAGGACATGTGTTCAAAGGAATCCTCTATGACTATGGTCCTGAGAGTGGCAACAATAATAATAACAGTAATAATAGCAATAATAATTACATGGCTGGGGAAACCTCTGCTGGTGTTGCTGGAGCTGCTCAGCCCTTGAACCTCACTGCTTCTGCTGCACTTGTTGATCCTTCCTCCTTGTATCCGGTTAACACTTTCATGGCGGGTAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 927 0.5415 MAGLFSLGGGRGSNNNNQQDNNNQSEIPPAETLFWYSKNDDVSSYHHRGFELWNQQEQHVMQHHPHARPLLQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRVAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQTLAALQEQQQQQQRDISKRPRDPTACTRLPSSSGLEEGHFPALVSSPAEFRCVRVTCVEDADDRYAYQTAVNIGGHVFKGILYDYGPESGNNNNNSNNSNNNYMAGETSAGVAGAAQPLNLTASAALVDPSSLYPVNTFMAGSGTQFFPHTRS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02164 308 MobiDBLite consensus disorder prediction 158 188 - -
Pumo4g02164 308 MobiDBLite consensus disorder prediction 1 26 - -
Pumo4g02164 308 Pfam Domain of unknown function (DUF702) 106 243 - -
Pumo4g02164 308 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 291 IPR007818 GO:0003700|GO:0006355
Pumo4g02164 308 MobiDBLite consensus disorder prediction 9 26 - -
Pumo4g02164 308 Coils Coil 150 170 - -
Pumo4g02164 308 NCBIfam LRP1 C-terminal domain 194 242 IPR006511 -
Pumo4g02164 308 NCBIfam putative zinc finger domain, LRP1 type 108 150 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02164 Pumo-Chr4 31531493 31534277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02164 1 308 C2H2 Transcription Factor Family AT3G51060 44.415 3.72e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pumo4g02164 DUF702 1.1e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02164 - - gmx:100789129 449.514