Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02156 ATGGAGTTTGCCAGTTTCCATCCTCAGCATCAGCTCCAAGAAGAATCTGCTCAGTGTATAGCTTCGGCAACCCCACCATCTGACTCTAAACCTTCCACTATCACTAATCAATCATGGATCCCAAGCAACATATACAATGGTTATAACAGTGGGTTTCTAACTGAAAGCTTTGCAAATTCAAGAGAACTACAGCACAAGCACGCCATGACCGATTCACTTAGAATTTCAACAAGGCAAGCCTTTGGTTTTCACAATGGAAAAAGCCTCACTCAACAGCCATACGCTAGTGATCTCTTTCCAGCAAGAACCAAAGGTGAAACGATCAACACCTCCATGAAGGCTATGGAGGAATCATCACTAATCCCAATTCATGAACCACGATATTCTTCTCGTAGTTTCTTATCTAGTCTTGGTGTAACTGGTGAAGAGTTTTTTCCTGCAGCTGACAATGTCTATCATAATATCAAGCCTATAGATGGAGGGACCCTAAGCAAGAGATATAATAATAACAACTTTGGCGATTTTGCCTTAATTTCGAATTTACCAACCCTAGATATGACCTCTTCCTTAGTTTCATGTTCTTTGGGCTTAAATCCTAAGATGTTAGATCTGCATACAAGTTATAGTGGGAGTTGTGGCATACAACCTTGCTATGATACTTTTGGCCTTAACGAGAGCATATCTTTGAGCCATGGCAACATGCATGGCCGCGAAAATAGTCCATCAAACAGCTCAAATAAAATTCCATCATTTATAAGTGAAGTTGCAACAACGAAAAGGCCTAGCAATTGCTCTCTACCAAAAGAATCTGAAGCAAAAGCTAAGAAGTCAAGGCCATCATGCCCTCCTTTGAAGGTAAGAAAGGAAAATTTGGGGGATAGGATCCAAACTCTTCAGAGATTAGTGGCACCTTTCGGAAAGACCAGTACAGCCTCAGTCTTGAGTGAAGCCATTGGCTACATCCATTTCCTTCACCAACAAATCCAGACTTTGAGCATTCCTTACATGAAATCCGCGCAAAGCAAGCCCTCTAGAATGGTGCAGCTGGATTCAAATAAGGTAGATAGCAGAGAATTCAAGCCAGACCTTAGAAGCAGAGGCTTGTGTCTTGTGCCCCTTTCTTACGCATCATTTATTCATCGTTGTGTTTAG 1152 0.4167 MEFASFHPQHQLQEESAQCIASATPPSDSKPSTITNQSWIPSNIYNGYNSGFLTESFANSRELQHKHAMTDSLRISTRQAFGFHNGKSLTQQPYASDLFPARTKGETINTSMKAMEESSLIPIHEPRYSSRSFLSSLGVTGEEFFPAADNVYHNIKPIDGGTLSKRYNNNNFGDFALISNLPTLDMTSSLVSCSLGLNPKMLDLHTSYSGSCGIQPCYDTFGLNESISLSHGNMHGRENSPSNSSNKIPSFISEVATTKRPSNCSLPKESEAKAKKSRPSCPPLKVRKENLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQIQTLSIPYMKSAQSKPSRMVQLDSNKVDSREFKPDLRSRGLCLVPLSYASFIHRCV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02156 383 MobiDBLite consensus disorder prediction 259 288 - -
Pumo4g02156 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Pumo4g02156 383 Gene3D - 285 347 IPR036638 GO:0046983
Pumo4g02156 383 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 132 377 - -
Pumo4g02156 383 CDD bHLH_AtbHLH_like 285 332 IPR045239 -
Pumo4g02156 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 337 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02156 Pumo-Chr4 31276877 31281121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02156 239 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 52.817 4.38e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02156 - - gmx:100785177 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02156 4 31276877 31281121 Pumo4g02156 4 31276877 31281121 ECH