Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02143 ATGGAGTTTGCCAGTTTCCATCTTCAGCATCAGCTCCAAGAAGAATCTGCTCAGTGTATAGCTTCAGCAACCCCACCATCTGACTCTAAACCTTCCACTATCACTAATCAATCATGGATCCCAAGCAACATATACAATGGTTATAACAGTGGGTTTCTAACTGAGAGCTTTGCAAATTCAAGAGAACTACAGCACAAGCACGCCACGACTGATTCACTTAGAATTTCAACAAGGCAAGCCTTTGGTTTTCACAATGGAAAAAGCCTTATTCAACAGCCAGCTAGTGATCTCTTTCCAGCAAGAACCAAAGGTGAAACGATCAACACCTCCATGAAGACTATGGAGGAATCATCACTAATCCCAATTCATGAACCACGATATTCTTCTCCTAGTTTCTTATCTAGTCTTGGTGTAACTGGTGAAGAGTTTTTTCCTGCAGCTGACAATGTCTATCATAATAACAAGCCTATAGATGGAGGGATCCTAAGCAAGAGATATAATAATAACAACTTTGGCGATTTTGCCTTAATTTCGAATTTACCAACCCTAGATATGACCTCTTCCTTAGTTTCATGTCCTTTGGGCTTAAATCCTAAGATGTTAGATCTGCATACAAGTTATAGTGGGAGTTGTGGCATCCAACCTTGCTATGATACTTTTGGTCTTAACGAGAGCATATCTTTGAGCCATGGCAACATGCATGGCCGCGAAAATAGTCCATCAAACAGCTCAAATAAAATTCCATCATTTATAAGTGAAGTTGCAACGACGAAAAGACCTAGCAATTGCTCTCTACCAAAAGAATCTGAAGCAAAAGCTAAGAAGTCAAGGCCATCATGCCCTCCTCTGAAGGTAAGAAAGGAAAATTTGGGGGATAGGATCCAAACTCTTCAGAGATTAGTGGCACCTTTCGGAAAGACCAGTACAGCCTCAGTCTTGAGTGAAGCCATTGGCTACATCCATTTCCTTCACCAACAAATCCAGGTTAGACACTAA 996 0.4096 MEFASFHLQHQLQEESAQCIASATPPSDSKPSTITNQSWIPSNIYNGYNSGFLTESFANSRELQHKHATTDSLRISTRQAFGFHNGKSLIQQPASDLFPARTKGETINTSMKTMEESSLIPIHEPRYSSPSFLSSLGVTGEEFFPAADNVYHNNKPIDGGILSKRYNNNNFGDFALISNLPTLDMTSSLVSCPLGLNPKMLDLHTSYSGSCGIQPCYDTFGLNESISLSHGNMHGRENSPSNSSNKIPSFISEVATTKRPSNCSLPKESEAKAKKSRPSCPPLKVRKENLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQIQVRH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02143 331 Gene3D - 284 331 IPR036638 GO:0046983
Pumo4g02143 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 329 IPR036638 GO:0046983
Pumo4g02143 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 121 329 - -
Pumo4g02143 331 MobiDBLite consensus disorder prediction 258 286 - -
Pumo4g02143 331 CDD bHLH_AtbHLH_like 284 329 IPR045239 -
Pumo4g02143 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 274 323 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02143 Pumo-Chr4 30742858 30746206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02143 238 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 54.348 1.49e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02143 - - vum:124832810 517.309