Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02124 ATGTCATTGAGAAGCATAGTCCGTGAACTCAAGGAGATGAGAGATGGAATAGGAAGCACATCAAAGCGGGGTGCAGAAAGCAAGCATCGGCTCAGTCGGACAAAGTCACATGTAGCTCCAGATGTTCTTGCAACTCCCTTTGAACCTATTCAACAGGGACAATGGGCAAATCTACCATCAGAATTGCTTTTGGACATAATCCAGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCCCGTGCTGTTGTTGTTTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCATTACAAAAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCGGGTCCGCGTGATTCTCCTATACAGTGCTTTATCAGGAGGAACAAAGAAACTTCTACATATCTATTGTACTTTGGTCTGGTTCCATCAGAGAATGACAGTAATAAGTTGTTATTAGCTGCCAAAAGGATAAGAAGGGCAACAGGCACCGACTTTGTCATATCCTTGGCTGCAGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTGAGGTCTAATTTTTTGGGTACCAAGTTCACCATATATGACAGTCAAGCTCCACATGATGCTGCAATTCAACCAAATTGTCAATCTAGTAGGAGATTTCATTCTAAGCAGGTGTCACCAAGAGTTCCAGCATGTAGCTATCTTGTTAGTACTGTTTCCTACGAACTGAATGTCCTCTGCACTAGAGGGCCAAGAAGAATGCATTGCGTCATGAACTCGATACCCGTCTCAGCTATTCAGGAAGGGGGCAATGCCCCAACTCCGACATCTTTCCCTCAAATATACGATGAACCTTTTTCTCCATCACCAGCACTGAAAGAAAAAGTTCCAGTCACAGATTTAAACTCTGCAAGTTTATCAGAGTCACCAGTATCGAGCCAAGGCTCAACCGAGCAATTAGTACTGAAAAACAAGGCTCCCAGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTTTCGGTGGCTTCTGTTAAGAACTTTCAACTTGTAGCTGCTGTTGATCCATCTCATAATATTTCTGCTGAGGAGCAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTCACCATGGATTACCGTTATCCACTCTCTACCTTCCAAGCCTTTGCCATCTGCTTGAGCAGCTTTGACACTAAACCTGCCTGTGAATGA 1245 0.4353 MSLRSIVRELKEMRDGIGSTSKRGAESKHRLSRTKSHVAPDVLATPFEPIQQGQWANLPSELLLDIIQRVEESETSWPARAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNKETSTYLLYFGLVPSENDSNKLLLAAKRIRRATGTDFVISLAADDFSRASNKYVGKLRSNFLGTKFTIYDSQAPHDAAIQPNCQSSRRFHSKQVSPRVPACSYLVSTVSYELNVLCTRGPRRMHCVMNSIPVSAIQEGGNAPTPTSFPQIYDEPFSPSPALKEKVPVTDLNSASLSESPVSSQGSTEQLVLKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAVDPSHNISAEEQEKVILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02124 414 Pfam Tub family 116 409 IPR000007 -
Pumo4g02124 414 Pfam F-box domain 55 102 IPR001810 GO:0005515
Pumo4g02124 414 Gene3D - 48 101 - -
Pumo4g02124 414 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Pumo4g02124 414 PANTHER TUBBY-RELATED 23 412 - -
Pumo4g02124 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Pumo4g02124 414 CDD F-box_AtTLP-like 55 99 - -
Pumo4g02124 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Pumo4g02124 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Pumo4g02124 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Pumo4g02124 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Pumo4g02124 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Pumo4g02124 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Pumo4g02124 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Pumo4g02124 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Pumo4g02124 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Pumo4g02124 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Pumo4g02124 414 FunFam Tubby-like F-box protein 112 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02124 Pumo-Chr4 30316349 30319507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02124 1 414 TUB Transcription Factor Family AT2G18280 63.723 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo4g02124 Tub 4.7e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02124 K19600 - gmx:100805380 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02124 4 30316349 30319507 Pumo4g02124 4 30316349 30319507 ECH
Pumo4g02124 4 30316349 30319507 Pumo8g01817 8 54374643 54377805 ECH
Pumo8g01817 8 54374643 54377805 Pumo4g02124 4 30316349 30319507 PCT