Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02122 ATGGGAACTGATAGCGGTGAACTGGTAGAGACATTACCAAATCCTCGCTCCTTTAAGGTACATCGTACAATGTGCACAGAACTCCGGAAATTAGTTGATAGAATCTTGCAGATAATTCCAAAGATAGAAGCAGCACGCCCTTGTGGAATGCAGGCTCTGTGTTTGCTGAACAAGGCAATTGATAAAGCCAAACAACTCCTGCTATACTGCTCCGAATCTAGTAAACTCTACCTGGCAATAACAGGGGATTCCATACTCTTAAAATTCCAGAAGGCAAGAAAATCGTTGGCAAAAAGCTTAGTCCAGATTCAGAATATGGTTCCGGTTATGTTGGCTGTAGAGATTTCTCGACTAGTTGGTGATCTTGAGTGCGTGACATTTGTCCTCAACTCTGCTGAAGAAGCAGCTGGGAAGGTTGTGAAACAATTGCTCCAGCCAGATCCTTCAACATCAGATAAAGATTCAATGGAGAAATCTGAGATAAAAGATTTTCAGTTTGTAGCAGCAAGCCTTGGTATTACATCCCCAAAGGCTATCTTAATAGAGAAACGATCTATTCAGAAGTTGCTAGAAAAAGTCAAACCAAATGACCAGAACAAAGAGATTGTCTTGAAAAATCTTTTGATTCTCCTGGTAAAGCACCGAAAATCAATCACGGGAGAACAAATGGAGGTCTATTCTCAAAGTGAAGGACCAATCACAACTGAGAACTCAGGTCATGAGTCTCAAAATATCCTTCGTGCCAAGTCAGACCCATACTTGAACCATGGTCAGTATAGAACTCATGCCACTGAGTTGGGTAGACTTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAAAAACATATGAAAGGATGTGGATACAAAAATGGTTTGATGAGGGTAATACTACATGCCCAAAAACTAAAAAGAAACTGGTTCATATGGCATTGACTCCAAACGTTGCCTTAAAGGACTTAATATTAAAGTGGTGCGAAACTAATGGAGTCTCCATTCCTGACCCGAGTAGGCAAGCGCAAGATTTGCACTCATGGGATGCTTCCTCCAATTCCATTAGGAGTTTTGGAAGTTCTTTGTATGATTTGAACTTCCCAACGGATTTTAGTAACATGTCTCTTGGATCATTAGATACCAGTTATAATTCAGATTCCTCCCACACTAAGGCCAATCATAGCTTGAATTTGATGTTGAACAAGAGCAGTGACAATTCTCACAGGCATCAATCTCGTGCACAGATACATGACGCTGATCTGATGCATTTGTCTAAACTCCATGAACGTCAATGGGAATCTCAATGCCAAGTCATTGAAGATATGAAAATAGATTTCAGATGCAATTACCAAGCTTATTGCACTGTGTCACCTGAGAATTTCATTGACCCATTCACGAGATTTCTGAGCACTGCTTGTGAGAGGCATGATGTAAAAGCTCTGAGAGCGGGAACTAAGTTGCTATTGGAATTTATGAAGTGCTGCAGAAATGGGATGACCAATTTAAGTGAAGATACATGCATTATGTTGGCAAGTCTTCTTGACACAGAAGTGATTGGTGAAGCTCTCGCCATAATGGAAGAACTGACAAGGAATCGGTATGAAAAAGCTAACGTTGCAGCTTCCAGTGTACTCACTTCTGTTTCAAAGATCCTTGATTCAGGTAATGAAGAGTTCCAACGAAAAGCTATTAAAATAATGTATAATTTTTCATCCAATGTTCAAATTTGTCCCTACATGGTATCTCTCGGGTGCATCCCAAAATTGCTGCCATTTTTTGAAGACAGAACCCTTTTGAGAGACTGTATACACATTTTGAAAAACCTTTGTGATACTAAAGAGGGTAGGGTTACTGTTGTTGAAACAAAAGGATGCATATCTTCTGTTGTTGAAATACTTGGGTCTGGCAGTGATGAGGAAAAAGAACCTGCACTGGTTATTCTTCTCTCTTTATGCTCTCAACGTGTGGAGTACTGTCAGTTGGTTATGCATGAGGGGATTATTCCTTCTCTTGTCAACATCTCCAATAAAGGAAGTGATATGGCAAAGGCTTATGCATTGGAACTACTCCGTCTTTTGAAGGACGATAACGAGTTTGAGTATGAAGATTATTGTGAGCCAAATCTCAGTGCCTCTCAAGAACCTAACAATCACTATCAAGAAAAGAAATCGTCAAAGAAATCGTCGATTTTGAAGAAACTGTCACTCTTCTCAAAATCCAGTTCAGTTACACCAAAAAACAAGAGATGA 2280 0.3996 MGTDSGELVETLPNPRSFKVHRTMCTELRKLVDRILQIIPKIEAARPCGMQALCLLNKAIDKAKQLLLYCSESSKLYLAITGDSILLKFQKARKSLAKSLVQIQNMVPVMLAVEISRLVGDLECVTFVLNSAEEAAGKVVKQLLQPDPSTSDKDSMEKSEIKDFQFVAASLGITSPKAILIEKRSIQKLLEKVKPNDQNKEIVLKNLLILLVKHRKSITGEQMEVYSQSEGPITTENSGHESQNILRAKSDPYLNHGQYRTHATELGRLTPPEEYTCPISLRLMYDPVVIASGKTYERMWIQKWFDEGNTTCPKTKKKLVHMALTPNVALKDLILKWCETNGVSIPDPSRQAQDLHSWDASSNSIRSFGSSLYDLNFPTDFSNMSLGSLDTSYNSDSSHTKANHSLNLMLNKSSDNSHRHQSRAQIHDADLMHLSKLHERQWESQCQVIEDMKIDFRCNYQAYCTVSPENFIDPFTRFLSTACERHDVKALRAGTKLLLEFMKCCRNGMTNLSEDTCIMLASLLDTEVIGEALAIMEELTRNRYEKANVAASSVLTSVSKILDSGNEEFQRKAIKIMYNFSSNVQICPYMVSLGCIPKLLPFFEDRTLLRDCIHILKNLCDTKEGRVTVVETKGCISSVVEILGSGSDEEKEPALVILLSLCSQRVEYCQLVMHEGIIPSLVNISNKGSDMAKAYALELLRLLKDDNEFEYEDYCEPNLSASQEPNNHYQEKKSSKKSSILKKLSLFSKSSSVTPKNKR 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02122 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Pumo4g02122 759 Gene3D - 452 723 IPR011989 -
Pumo4g02122 759 FunFam RING-type E3 ubiquitin transferase 270 342 - -
Pumo4g02122 759 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Pumo4g02122 759 PANTHER U BOX DOMAIN-CONTAINING 23 707 - -
Pumo4g02122 759 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Pumo4g02122 759 MobiDBLite consensus disorder prediction 718 741 - -
Pumo4g02122 759 SUPERFAMILY ARM repeat 521 708 IPR016024 -
Pumo4g02122 759 SMART arm_5 622 663 IPR000225 GO:0005515
Pumo4g02122 759 SMART arm_5 583 621 IPR000225 GO:0005515
Pumo4g02122 759 SMART arm_5 665 705 IPR000225 GO:0005515
Pumo4g02122 759 SUPERFAMILY RING/U-box 265 348 - -
Pumo4g02122 759 CDD RING-Ubox_PUB 272 321 IPR045210 -
Pumo4g02122 759 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02122 Pumo-Chr4 30305486 30309763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02122 15 728 U-box Gene Family AT4G36550 37.671 1.64e-140 429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02122 4 30305486 30309763 Pumo4g02122 4 30305486 30309763 ECH
Pumo4g02122 4 30305486 30309763 Pumo8g01818 8 54379206 54385417 ECH
Pumo8g01818 8 54379206 54385417 Pumo4g02122 4 30305486 30309763 PCT