Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02118 ATGGAAATGAGAGAGCAAGATAAGGTAATAGAGATGCCTAGCACTTTGGGTTATAACCAGCTCCCAAATAGAAATTCCTCTTCTTCCAAGCTATCATCACCAATAGGGGAAAGAAGTGACCTACCTCCTCAATCATCTCACACATTAGTTTTCAGTGATCCACCACCCCAAACTTCATCACATCATCAACATCACCATAATCTCTATCCCCCTGCTTTCCCACCAAACCGTCTTCAACTTCCACAACCTCACAGACCCAGAACAGATCCAGATCCAAGTCATCCTATTTCTCCTCCAATTATAAGCACACCAAGAACAGCACCACACACAACAGGAACTTCCACAACAACATTCAGATACCGAGAATGTCTGAAGAATCATGCTGCAAGCATGGGGGGCCGTGTCACTGATGGGTGTGGAGAGTTCATGCCAAATGGAGAAGAGGGCACCCCAGAATCCTTCAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCTGAAGGAGATAACTCACAACAACATGTTCTCAACTACCACCACCACCACCTCCCTTATTACCCCAACAAAAGCAATAGGAACATTATCATTCATTCTCCACCACAATCTCATCACCACCTTCATGGGGTGGTGGCTGCTACCCCTACCCCTTCAGGTGGGCCTGTTCAGCCCGTGATGCTGGGCTTTGGGGGAGGCCCAGCTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCAATGATGGAGGAGGGAACTTGCTAGTGCAGCCACCACTGTCTTCATCCAACAAGAAGAGGTTCAGGACCAAGTTCACACAGCAACAAAAAGATAGGATGATGGAGTTTGCTGAGAAACTGGGGTGGAAGATCCAGAAGCAAGATGAACAGGAACTGCATCACTTTTGCTCTCAGGTTGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA 996 0.4689 MEMREQDKVIEMPSTLGYNQLPNRNSSSSKLSSPIGERSDLPPQSSHTLVFSDPPPQTSSHHQHHHNLYPPAFPPNRLQLPQPHRPRTDPDPSHPISPPIISTPRTAPHTTGTSTTTFRYRECLKNHAASMGGRVTDGCGEFMPNGEEGTPESFKCAACECHRNFHRKEPEGDNSQQHVLNYHHHHLPYYPNKSNRNIIIHSPPQSHHHLHGVVAATPTPSGGPVQPVMLGFGGGPAESSSEDLNMFQTNDGGGNLLVQPPLSSSNKKRFRTKFTQQQKDRMMEFAEKLGWKIQKQDEQELHHFCSQVGVKRQVFKVWMHNSKQAMKKKQM 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02118 331 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 95 324 - -
Pumo4g02118 331 MobiDBLite consensus disorder prediction 16 65 - -
Pumo4g02118 331 Gene3D - 259 328 - -
Pumo4g02118 331 Pfam ZF-HD protein dimerisation region 118 170 IPR006456 -
Pumo4g02118 331 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 119 169 IPR006456 -
Pumo4g02118 331 FunFam Zinc-finger homeodomain protein 2 258 328 - -
Pumo4g02118 331 MobiDBLite consensus disorder prediction 1 114 - -
Pumo4g02118 331 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 120 169 IPR006456 -
Pumo4g02118 331 SUPERFAMILY Homeodomain-like 257 328 IPR009057 -
Pumo4g02118 331 NCBIfam homeobox domain, ZF-HD class 267 324 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02118 Pumo-Chr4 30244740 30246473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02118 93 331 ZF-HD Transcription Factor Family AT2G18350 47.177 8.63e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo4g02118 ZF-HD_dimer 2.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02118 - - ccaj:109810490 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02118 4 30244740 30246473 Pumo4g02118 4 30244740 30246473 ECH
Pumo4g02118 4 30244740 30246473 Pumo8g01822 8 54436316 54438680 ECH
Pumo8g01822 8 54436316 54438680 Pumo4g02118 4 30244740 30246473 PCT