Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02113 ATGATGCACCGTTGTTGTTGCGGAGGAGGAGGCGGGTCTCAGGGGCACGTGATGGGCACGTGCACATGCGAAACCAGCTCTTACTCGATGCTCTTTTCTATGCCCAACGCCCACGGTGGTGGTGGTGGTCCCTATGATGATTACGAACACCACATGTACTCTTCTTCCTCCGTGGACTGCACGCTCTCCCTCGGAACACCCTCCACGCGTTTAACGCAGGACGAGGATAAACGACACCGCCACGATCGTCGTTCTTCCGTCACCAATTTTTGCCGGGACTTGCTGCAATCCAAACACAACGCGCAATCTCATCAAAGCAAGGCTAGCAGCAGAGGAGGCAATAGTGGTAACTCCAACAACAACGACCCTCTCCTCGCTCGTCGCTGCGCCAACTGCGACACCACTTCCACTCCCCTTTGGAGAAACGGTCCTCGTGGCCCAAAGTCACTATGCAATGCTTGCGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCGAGCGCCGCCGCCGCCACGTCAGCGGCGGTTCCCGGCGGCGTCATGGAATCGGCGCGCGTGTACGGCCACCACAACAATTCGTGGTACGCACACTCGCAGAGCCAGAAGATGATGGGCAACGAGTTACGCTTCATGGACGATTCTGACGACAGAGACTCGTCGGAGAACGGCATTCCGTTCCTCTCTTGGAAACTCAACGTTCCAGATCGAACGAGCTTCGTTCACGACTTCACAAGATGA 735 0.5619 MMHRCCCGGGGGSQGHVMGTCTCETSSYSMLFSMPNAHGGGGGPYDDYEHHMYSSSSVDCTLSLGTPSTRLTQDEDKRHRHDRRSSVTNFCRDLLQSKHNAQSHQSKASSRGGNSGNSNNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATSAAVPGGVMESARVYGHHNNSWYAHSQSQKMMGNELRFMDDSDDRDSSENGIPFLSWKLNVPDRTSFVHDFTR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02113 244 SMART GATA_3 123 176 IPR000679 GO:0006355|GO:0043565
Pumo4g02113 244 MobiDBLite consensus disorder prediction 71 86 - -
Pumo4g02113 244 PANTHER GATA TRANSCRIPTION FACTOR 18 15 244 IPR044272 GO:0003700|GO:0009908
Pumo4g02113 244 MobiDBLite consensus disorder prediction 64 86 - -
Pumo4g02113 244 CDD ZnF_GATA 128 160 IPR000679 GO:0006355|GO:0043565
Pumo4g02113 244 ProSitePatterns GATA-type zinc finger domain. 129 154 IPR000679 GO:0006355|GO:0043565
Pumo4g02113 244 MobiDBLite consensus disorder prediction 98 123 - -
Pumo4g02113 244 Gene3D - 125 201 IPR013088 GO:0006355|GO:0008270
Pumo4g02113 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 165 - -
Pumo4g02113 244 ProSiteProfiles GATA-type zinc finger domain profile. 123 159 IPR000679 GO:0006355|GO:0043565
Pumo4g02113 244 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02113 Pumo-Chr4 30149524 30151773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02113 27 244 C2C2-Gata Transcription Factor Family AT3G50870 47.529 2.66e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo4g02113 GATA 5.9e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02113 - - gmx:100799154 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02113 4 30149524 30151773 Pumo4g02113 4 30149524 30151773 ECH
Pumo8g01830 8 54552384 54553972 Pumo4g02113 4 30149524 30151773 PCT