Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02100 ATGGCTCCCTCTCCCCCTCATAGCTCCGCTCCCCATGACAACACACCCGATGATGCCACTCCCGATAATTCCACACCCGATAACTCCTCACCTGATGATTCCACACCGGATAACTCCACTCCCGATAACTCCACCCCCGATAACTCCACGCCTGATCATTCCAACGGATCACACAAGGGTTCCTCCTCTCCTTCGGTGGGGGGGCATTCTCCGTCACCGGAAAAAGAGTCGAACAAATCATTGAGTGGACAATCGTCGAAGGATTCAAGCAATGACAGTAGCAGTAAAGCCGCATTGGGAGCTGGGATTGGAGTAGGGTTCGTTCTTCTTGTTCTAGTCATCGTGTGTTTCATTTGGTGTTGCAGGAAGAAGAAACGAAAGCAGCAGAAGTACTATTATCCAGATCCTTCTCACGCTCCAGCGAGTAATTATTACAACAGCGGGCAACACCCTCTCCCTAGTTGGCAACCAGTTTCAGGTCCTCATGGGGGTGACCATGTTATAAGGGTACAACAACAACAACAAGGAATGGGGATGGGGATGGGGATGGGGATGGGGATGGGGATGGGAATGGGAATGGGTCCTCCTAGTGGTGGCTGGGGTCCACCACATCCTGCAATGAACAGTGGTGAAATGAGCTCCAATTACTCAATGGGAATGAGTTCTTCCTCACCAGGCCTTTCTCTCACACTCAAGGGTGGTACCTTCACTTATGAGGAACTAGCAGCTGCCACCAAAGGATTTGCCAATGAGAACATTATAGGACAAGGTGGCTTTGGTTATGTCCATAAGGGAATTTTGCCTAATGGAAAGGAAGTGGCTGTTAAGAGTCTAAAAGCAGGTAGTGGGCAAGGAGAGCGCGAGTTCCAAGCTGAGATTGACATCATTAGCCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGAGGGCAAAGAATGTTGGTCTATGAATTTGTTCCCAATTCAACCTTGGAACATCACCTTCATGGAAAGGGCATGCCTACCATGGATTGGCCTACTAGAATGAGAATTGCACGAGGATCCGCCAAAGGGCTTGCCTACCTTCATGAAGATTGTAGTCCTCGCATTATCCACCGTGATATTAAAGCTTCTAATGTCCTTCTTGATGATAGCTTCGAAGCAAAGGTGTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGGTACCTAGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACCGGGAAGCGACCTGTAGATTTGACAAATGCCATGGAGGACAGCTTGGTGGATTGGGCTCGACCACTCCTAAATAAAGGGCTGGAAGATGGCAACTTTGGAGAGTTAGTGGATCCATTTTTGGAAGGCAAATACAATACTCAGGAAATGACAAGAATGGCAGCCTGCGCTGCTGCAAGCATTCGTCATTCTGCTAGAAAGCGTTCAAAAATGAGTCAGATTGTAAGAGCACTGGAAGGAGATGTCTCATTGGAAGACTTGAAAGATGGAATGAAGCTTGCGGGGAATGGGAATGGGAATGGGAATAGCAGTGCTTACACTTCATCTGGGAGCTCAGAATATGATACAATGCAATACAATGCTGATATGTTAAAGTTCAGACAGGCAATAATGGCAAGCCAAGAATTTAACGACAGCGGTGAGCTTACCAGTAAGGAGATGGGTCATCATTAG 1779 0.4699 MAPSPPHSSAPHDNTPDDATPDNSTPDNSSPDDSTPDNSTPDNSTPDNSTPDHSNGSHKGSSSPSVGGHSPSPEKESNKSLSGQSSKDSSNDSSSKAALGAGIGVGFVLLVLVIVCFIWCCRKKKRKQQKYYYPDPSHAPASNYYNSGQHPLPSWQPVSGPHGGDHVIRVQQQQQGMGMGMGMGMGMGMGMGMGPPSGGWGPPHPAMNSGEMSSNYSMGMSSSSPGLSLTLKGGTFTYEELAAATKGFANENIIGQGGFGYVHKGILPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCICGGQRMLVYEFVPNSTLEHHLHGKGMPTMDWPTRMRIARGSAKGLAYLHEDCSPRIIHRDIKASNVLLDDSFEAKVSDFGLAKLTNDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDLTNAMEDSLVDWARPLLNKGLEDGNFGELVDPFLEGKYNTQEMTRMAACAAASIRHSARKRSKMSQIVRALEGDVSLEDLKDGMKLAGNGNGNGNSSAYTSSGSSEYDTMQYNADMLKFRQAIMASQEFNDSGELTSKEMGHH 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02100 592 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 107 571 IPR047117 -
Pumo4g02100 592 SUPERFAMILY Protein kinase-like (PK-like) 225 520 IPR011009 -
Pumo4g02100 592 Gene3D Transferase(Phosphotransferase) domain 1 324 534 - -
Pumo4g02100 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 368 380 IPR008271 GO:0004672|GO:0006468
Pumo4g02100 592 MobiDBLite consensus disorder prediction 1 96 - -
Pumo4g02100 592 MobiDBLite consensus disorder prediction 11 96 - -
Pumo4g02100 592 FunFam Proline-rich receptor-like protein kinase PERK1 324 531 - -
Pumo4g02100 592 MobiDBLite consensus disorder prediction 538 554 - -
Pumo4g02100 592 ProSitePatterns Protein kinases ATP-binding region signature. 254 276 IPR017441 GO:0005524
Pumo4g02100 592 Pfam Protein tyrosine and serine/threonine kinase 251 450 IPR001245 GO:0004672|GO:0006468
Pumo4g02100 592 Gene3D Phosphorylase Kinase; domain 1 214 323 - -
Pumo4g02100 592 SMART serkin_6 248 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02100 592 ProSiteProfiles Protein kinase domain profile. 248 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g02100 592 MobiDBLite consensus disorder prediction 535 554 - -
Pumo4g02100 592 FunFam proline-rich receptor-like protein kinase PERK1 226 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02100 Pumo-Chr4 29928212 29933091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02100 101 582 Trihelix Transcription Factor Family AT1G70460 51.844 5.56e-156 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pumo4g02100 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02100 - - gmx:100805872 797.349