Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02097 ATGCCCCTGAGAAATTTCAAATTTTCATTTTCACATTCCCTGTTTGTGAATAGAGTTAGGTTCCCTATGCCGGTTGATTTGGCCAGCGTTTCCACAGCTTCAGGGGAAGCAGCAAGCGTCTCTTCCTCTGGCAACAACCAAACACAACCCGCCCCCAAGAAAAAACGAAACCTCCCTGGCATGCCAGATCCGGAGGCAGAGGTGATTGCTCTGTCGCCGAAGACGCTGCTGGCGACGAACCGTTTCGTGTGCGAGATATGCAACAAGGGGTTTCAGAGGGAACAGAACCTGCAGCTTCATCGGAGGGGCCACAACTTGCCGTGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAGGAAGAGAGTGTACGTGTGCCCCGAACCCATGTGCGTGCACCACCACCCTTCTAGAGCCCTCGGGGACTTGACGGGAATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCAAAGAAGTACGCGGTCCAGTCCGATTGGAAGGCGCACTCCAAAGTCTGCGGCACCAGAGAGTATAAGTGCGATTGCGGAACCGTTTTCTCCAGGAGGGATAGCTTCGTCACGCATAGGGCGTTTTGCGATGCGTTGGCGGTGGACAGTGCCAGATCTCACACTGTTGTAAAAGACAATTCAGAGAATGAATCAAAGGTTTTAACCGCTGATTCGCCGCCACCGCCACCGCCACCGCCACCGCCAGCTGCTGCTGCTGCTACCACCACCACCACTACTACTACGCAGTACAAATAG 786 0.542 MPLRNFKFSFSHSLFVNRVRFPMPVDLASVSTASGEAASVSSSGNNQTQPAPKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQREQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPMCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFVTHRAFCDALAVDSARSHTVVKDNSENESKVLTADSPPPPPPPPPPAAAAATTTTTTTTQYK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02097 261 FunFam protein indeterminate-domain 12-like 61 129 - -
Pumo4g02097 261 Gene3D Classic Zinc Finger 151 217 - -
Pumo4g02097 261 MobiDBLite consensus disorder prediction 36 64 - -
Pumo4g02097 261 Pfam Zinc-finger double-stranded RNA-binding 82 104 IPR022755 -
Pumo4g02097 261 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 227 IPR031140 -
Pumo4g02097 261 FunFam protein indeterminate-domain 5, chloroplastic-like 136 215 - -
Pumo4g02097 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Pumo4g02097 261 MobiDBLite consensus disorder prediction 36 53 - -
Pumo4g02097 261 MobiDBLite consensus disorder prediction 217 261 - -
Pumo4g02097 261 Gene3D Classic Zinc Finger 61 128 - -
Pumo4g02097 261 MobiDBLite consensus disorder prediction 233 248 - -
Pumo4g02097 261 SMART c2h2final6 82 104 IPR013087 -
Pumo4g02097 261 SMART c2h2final6 158 178 IPR013087 -
Pumo4g02097 261 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Pumo4g02097 261 SUPERFAMILY beta-beta-alpha zinc fingers 81 178 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02097 Pumo-Chr4 29852599 29853762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02097 23 217 IDZ Gene Family AT3G50700 83.838 1.90e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g02097 zf-C2H2_jaz 2.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02097 K25869 - gmx:100814444 395.201