Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02088 ATGAATCATCAACTTATCGAAGACCATATGATGCTCTTCTCTCGGCTACACCCTGGATCATTCACTGAAGTAACTCCTCAACAAGGGGAAAATAAGCCAAGACGCAAGCGAAACAGAAAGAATAGAGGAGGAGAAAATGGGGCTGAGGGCACCACCAAGAAGAGAAAGCTCACCATAGAACAAATTAGTCTTCTTGAGCAAAATTTCAGCAATGAACACAAACTTGAGTCCGAGAGGAAGGACCGGCTCGCATTGGAGCTTGGTTTGGACCCTCGACAAGTTGCGGTGTGGTTTCAAAATAGACGTTCTCGTTGGAAGACCAAAAAATTGGAGCAAGAGTACTACAATCTTAAGAGTGTTCATGAAACCACTATGCTTGAGAAATGCAACCTTGAGACCCAGGTGTTGAAGCTCGAGGAGAAGCTTTTGGAAGCAAAGAAAGAGATTCAGCGTCTACTAGAGAGTGGTGAAAGAGCCCCAAGCAACAGCTCCAGTTTCTCACAGTCAATGGAAGCTGTGAACCAACAATTTCTTAGGGTGGAAGAGTATGGTGATATTGGTGATGTGTTTTACATTCCAGAGACCCATTACATCAATGGGATGGAATGGATTAATCTGTACATTTGA 627 0.437 MNHQLIEDHMMLFSRLHPGSFTEVTPQQGENKPRRKRNRKNRGGENGAEGTTKKRKLTIEQISLLEQNFSNEHKLESERKDRLALELGLDPRQVAVWFQNRRSRWKTKKLEQEYYNLKSVHETTMLEKCNLETQVLKLEEKLLEAKKEIQRLLESGERAPSNSSSFSQSMEAVNQQFLRVEEYGDIGDVFYIPETHYINGMEWINLYI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02088 208 MobiDBLite consensus disorder prediction 19 55 - -
Pumo4g02088 208 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 169 IPR045224 GO:0003700
Pumo4g02088 208 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Pumo4g02088 208 Coils Coil 135 155 - -
Pumo4g02088 208 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Pumo4g02088 208 SMART HOX_1 51 112 IPR001356 GO:0003677
Pumo4g02088 208 SUPERFAMILY Homeodomain-like 52 115 IPR009057 -
Pumo4g02088 208 FunFam homeobox-leucine zipper protein ATHB-40 47 116 - -
Pumo4g02088 208 CDD homeodomain 53 109 IPR001356 GO:0003677
Pumo4g02088 208 Gene3D - 44 115 - -
Pumo4g02088 208 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Pumo4g02088 208 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Pumo4g02088 208 Pfam Homeodomain 53 106 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02088 Pumo-Chr4 29765901 29767565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02088 1 208 Homeobox Transcription Factor Family AT2G18550 47.534 6.64e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pumo4g02088 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02088 K09338 - gmx:100803948 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02088 4 29765901 29767565 Pumo4g02088 4 29765901 29767565 ECH
Pumo8g01863 8 54936630 54938594 Pumo4g02088 4 29765901 29767565 PCT