Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02077 ATGACTTATCAAGTCATAAATTCCATCCTTTGGTGCTTTGTTTTAGCTGTTGTGAGCATCACCATTTTCACTCCAAAAGTTAGTTATGCTAGCAAACAATCCAAGATAGAAGGCTTGGAAATGAATGAGATTGATCAATGTTGGAGATTAAATCCTGAATGGAGGAAACACCGTTCACAACTTGCCACATGTTCAGTGGGCTATGCAGGGAAGATGACAAACAACATTGGTAAAGACCTCATTCGTTATAAAGTTATTGATCCCAGTGATGACCCAATAAACCCCAAATATGGCACCTTGAGATACGGAGCTTCTAAGATTCAAGGCAAAGTCTGGATCACATTCCAAAGAGACATGTATATTAGGCTCAAGAAACCCCTTCTCATTAGCAGCTTCACAACCATCGATGGTCGAGGTGTTAATGTTCACATTGCTGATAATGCATGCTTAATGATCTTTAAGGCAACCAATGTAATCATCCATGGCCTTAGAATTCATCATTGCCGACCTCAAGATCCTGGAATGGTAATGGGTCCTAATGGAAAAGTGATGCCTTTGGGTCATGTTGATGGAGATGCAATAAGATTGGTTACGGCTTCAAAGATTTGGATTGATCACAACACTCTTCATGATTGCCAAGACGGTCTTCTTGACGTCACACGTGGTTCCACTGATGTGACTGTCTCCAACAATTGGTTCAGGGAGCAAAACAAGGTTATGCTTCTCGGGCATGATGATGGGTATATCAGAGACAAGGACATGAAGGTCACTGTTGTGTATAACTATTTTGGACCTAATTGCCACCAACGCATGCCAAGAATTCGTCATGGGTATGCACATGTTGCAAACAATCTTTACATGGGATGGGTGCAATATGCCATAGGTGGAAGCATGGAACCTAGCCTCAAAAGTGAATCAAACCTCTTCATAGCACCAACATCAGGGCGTAAGGAGGTAACATGGAGAAAAAGCAATAATGGAATTGGAGACACATGGGAATTTCATTCGGTGGGGGATGCTTTTGAAAACGGAGCCTCCTTCATGGAAACACAAGGTGGACAAGTACCAATGCCAAATTATAGCCCTGAACAAAGTTTTAAAGTTGCTGATGCCAAATGTGTGAGATCATTGACAATCTCATCTGGAGTTTTGCGATGCAGTAAAACCTTTATATGTTAA 1179 0.4148 MTYQVINSILWCFVLAVVSITIFTPKVSYASKQSKIEGLEMNEIDQCWRLNPEWRKHRSQLATCSVGYAGKMTNNIGKDLIRYKVIDPSDDPINPKYGTLRYGASKIQGKVWITFQRDMYIRLKKPLLISSFTTIDGRGVNVHIADNACLMIFKATNVIIHGLRIHHCRPQDPGMVMGPNGKVMPLGHVDGDAIRLVTASKIWIDHNTLHDCQDGLLDVTRGSTDVTVSNNWFREQNKVMLLGHDDGYIRDKDMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSESNLFIAPTSGRKEVTWRKSNNGIGDTWEFHSVGDAFENGASFMETQGGQVPMPNYSPEQSFKVADAKCVRSLTISSGVLRCSKTFIC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02077 392 PANTHER PECTATE LYASE 18-RELATED 38 388 IPR045032 GO:0030570
Pumo4g02077 392 SUPERFAMILY Pectin lyase-like 29 384 IPR011050 -
Pumo4g02077 392 Pfam Pectate lyase 127 309 IPR002022 -
Pumo4g02077 392 Gene3D - 41 385 IPR012334 -
Pumo4g02077 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Pumo4g02077 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Pumo4g02077 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Pumo4g02077 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Pumo4g02077 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Pumo4g02077 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Pumo4g02077 392 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Pumo4g02077 392 SMART amb_all 118 315 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02077 Pumo-Chr4 29553969 29555660 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02077 72 319 Polysaccharide Lyase AT5G09280 72.581 5.10e-141 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02077 K01728 - gmx:100811216 756.518