Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02073 ATGGGTTGGTTTACTAAATTGCTTAAGGGATCCAACCGTAGGTCTTCTGGAGGAAGATATCATGGGAAATATGGAGATGACAGAATTTCAGACAATCATGATCATTCAGCGGATGATTTGACGGATATTGAGAAAGAAGAAATTGATCGGGTAATAGCAATCTCTCTTTCAGAGGCAGATCAGAAAGGGAAACAAGTTATTGAGGACAACTCTGAATCTGAAGATGATGAACTGTGTCCACTTAGTGACGAGGAAGATGAACGTGTTGGTGAAGTTCAGCAAGATGAAGATGACCATCATGCTAAAATTCAACAGGATGAAGACAAACATCTTGATGAAGCTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCACTAGTTCTCCTCCTCGATCTGACACCGATTCTTTATTTCCACCTTTGGCACACTTATTCCCACCTGGATACAGAATCTGTGCTGGCTGCAATGCCGAGATTGGCAATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTTTTGCAATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCCATGTCTGGAAGTCGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCGAGATGTGATGTTTGCAAGAACTTTATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGCGATGGTACTCCTCGTTGTTGTAGTTGTCAAAGAATGGAGTCAGTGGATGCCAAATATCTGTTGCTTGATGATGGTAGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTTGAAATACAAGAATTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCGCTGAACGAGGCCATGGAGGGAGAGAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTATCAGAAGAGCAAACTATCCCCACTATTTTAAGGAGACCAAGGATAGGGGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGATCCGTCATTGCGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACTGGATCAATTCTGGCTCATGAAATGATGCATGCATGGCTTAGACTCAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATCTATTCCAGCTCTGGGAATGATGGTGCACCATCATCATCCTCATCCTCTTTGTCACCTTCGTCCTCTTCATCATCGAAGAAGGGTAAACGTTCAGACTTTGAGAAGAAACTTGGTGAGTATTTCAAACACCAGATTGAGTCAGATAGCTCATCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCTGTGCTTAAGTATGGACTTAGAAGTACCCTTGACCATATCCGATTGACCGGAAGTTTTCCATATTGA 1578 0.424 MGWFTKLLKGSNRRSSGGRYHGKYGDDRISDNHDHSADDLTDIEKEEIDRVIAISLSEADQKGKQVIEDNSESEDDELCPLSDEEDERVGEVQQDEDDHHAKIQQDEDKHLDEAQLEEDEQLARAIQESLSTSSPPRSDTDSLFPPLAHLFPPGYRICAGCNAEIGNGRFLSCMGGYWHPECFFCNACKLPITDYEFSMSGSRRYHKSCYKELHHPRCDVCKNFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPRIGAGYQLIDMITEPFRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSSSGNDGAPSSSSSSLSPSSSSSSKKGKRSDFEKKLGEYFKHQIESDSSSAYGDGFREGNQAVLKYGLRSTLDHIRLTGSFPY 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02073 525 Gene3D Cysteine Rich Protein 152 216 - -
Pumo4g02073 525 MobiDBLite consensus disorder prediction 1 37 - -
Pumo4g02073 525 Pfam LIM domain 158 212 IPR001781 -
Pumo4g02073 525 CDD LIM_DA1 158 210 - -
Pumo4g02073 525 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Pumo4g02073 525 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Pumo4g02073 525 PANTHER PROTEIN DA1-RELATED 2 3 525 IPR045218 -
Pumo4g02073 525 MobiDBLite consensus disorder prediction 70 92 - -
Pumo4g02073 525 FunFam Protein DA1-related 1 152 211 - -
Pumo4g02073 525 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 183 - -
Pumo4g02073 525 SMART lim_4 157 209 IPR001781 -
Pumo4g02073 525 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Pumo4g02073 525 MobiDBLite consensus disorder prediction 447 472 - -
Pumo4g02073 525 MobiDBLite consensus disorder prediction 447 467 - -
Pumo4g02073 525 SMART uim 43 62 IPR003903 -
Pumo4g02073 525 SMART uim 117 136 IPR003903 -
Pumo4g02073 525 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 242 - -
Pumo4g02073 525 Pfam Protein DA1 307 520 IPR022087 -
Pumo4g02073 525 MobiDBLite consensus disorder prediction 56 102 - -
Pumo4g02073 525 MobiDBLite consensus disorder prediction 19 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02073 Pumo-Chr4 29468917 29475030 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo4g02073 DA1-like 1.3e-103 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02073 - - gmx:100806605 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02073 4 29468917 29475030 Pumo4g02073 4 29468917 29475030 ECH
Pumo4g02073 4 29468917 29475030 Pumo8g01886 8 55297417 55303923 ECH
Pumo8g01886 8 55297417 55303923 Pumo4g02073 4 29468917 29475030 PCT