Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02072 ATGGGGGATAGTGGGTTTTTGTATTACAATCAACTAAGTGGAGGACCCTCTTCTTATAAGAGTACTCTTGGGGGTCATCACCACCAAGCATTGTTGGGACAGACCCACCAGGGACATGTTGGGTTTGGGGCAGCAACCTCGTCTACATCATCCTTAGGTGTTGTAAACGCATTGAGGAATTCAAAGTATGTCAAGGCTGCTCAAGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGAGGCCAGTTCAAGAAAAACAAGTTCAATAGGCAACTCTCAAACCCTAGTTCCAATCTAGGAGGTAGTGGCGGTGCCGGCGGCGGTGGCGGTGCTTCCTCGTCTTCATCAAAGGATGTTCCTCCTTTGTCAGCAGCTGATAGGATTGAGCATCAAAGGAGGAAGGTCAAACTTCTAACCATGCTTGAAGAGGTGGATCGGAGATACAGTCACTACTGCGAGCAAATGCACATGGTGGTGAACTCATTTGACATGGTGATGGGTTTCGGTGCTGCGGTGCCATACACGGCACTGGCGCAGAAAGCAATGTCTCGACACTTTAGGTGTCTGAAGGATGCGATCACAGCGCAGCTGAAGCATAGTTGTGAGGTGTTGGGAGAGAAAGATGGGGCAGGGAACTCGGGCTTGACCAAAGGAGAGACCCCAAGGCTCAAGTTGCTTGAACAAAGCTTGAGACAGCAAAGAGCGTTTCATCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGGTTGCCAGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCGAGGGTTCGGTTGTGGAAACCCATGGTGGAAGACATGTACCAACAAGAACTCAAGGAAGCCGAAGGGGCAGAAGATGAAAGGGAGAGGAACCAAAGCAGCAGCAACAACAGTGGCCACCAATTGGCACAAACTCCAACGCCCTCAGCCACGGCATCCACAGCAACCGCGCCACCGCCAAATACAACGACGACGACAACAACCGGAAAAAGATCCGATCCCGAAAGCGACCCTTCACTCGCACCAATAACGCAAGCGAATTCTGCCACTACTGTTGTCGCCACCACTGCCACATCTGAGGCGGTGCCACCGTCAATGGTGGCGGATGAATCGTGCAGGCATGGTAGCCTTGTTGCAACGGAGTTTGGGACCGCTTCTGCTGCCTCTGACATTGGTTCCACACTGATTAGGTTTGGGACCACCTCCGGTGACGTGTCACTCACACTAGGGCTTCGTCACGCCGGGAACATGCCGGAGAAAACTCCGTTCTCCGTTAGGGACTTTGGAGGCATTTAA 1410 0.5128 MGDSGFLYYNQLSGGPSSYKSTLGGHHHQALLGQTHQGHVGFGAATSSTSSLGVVNALRNSKYVKAAQELLEEFCSVGRGQFKKNKFNRQLSNPSSNLGGSGGAGGGGGASSSSSKDVPPLSAADRIEHQRRKVKLLTMLEEVDRRYSHYCEQMHMVVNSFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCEVLGEKDGAGNSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEDERERNQSSSNNSGHQLAQTPTPSATASTATAPPPNTTTTTTTGKRSDPESDPSLAPITQANSATTVVATTATSEAVPPSMVADESCRHGSLVATEFGTASAASDIGSTLIRFGTTSGDVSLTLGLRHAGNMPEKTPFSVRDFGGI 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02072 469 MobiDBLite consensus disorder prediction 332 386 - -
Pumo4g02072 469 Pfam Associated with HOX 58 193 IPR006563 -
Pumo4g02072 469 CDD homeodomain 246 307 IPR001356 GO:0003677
Pumo4g02072 469 MobiDBLite consensus disorder prediction 317 386 - -
Pumo4g02072 469 SMART prehox3 52 194 IPR006563 -
Pumo4g02072 469 Pfam Homeobox KN domain 263 302 IPR008422 GO:0003677|GO:0006355
Pumo4g02072 469 ProSiteProfiles 'Homeobox' domain profile. 243 306 IPR001356 GO:0003677
Pumo4g02072 469 FunFam BEL1-like homeodomain protein 4 249 311 - -
Pumo4g02072 469 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 39 334 - -
Pumo4g02072 469 SUPERFAMILY Homeodomain-like 247 313 IPR009057 -
Pumo4g02072 469 MobiDBLite consensus disorder prediction 317 331 - -
Pumo4g02072 469 Coils Coil 312 332 - -
Pumo4g02072 469 Gene3D - 249 311 - -
Pumo4g02072 469 SMART HOX_1 246 310 IPR001356 GO:0003677
Pumo4g02072 469 MobiDBLite consensus disorder prediction 87 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02072 Pumo-Chr4 29413679 29421838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02072 52 469 Homeobox Transcription Factor Family AT2G23760 56.118 1.11e-153 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo4g02072 POX 1.8e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02072 - - gmx:100807143 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02072 4 29413679 29421838 Pumo4g02072 4 29413679 29421838 ECH
Pumo4g02072 4 29413679 29421838 Pumo8g01887 8 55348318 55356025 ECH
Pumo8g01887 8 55348318 55356025 Pumo4g02072 4 29413679 29421838 PCT