Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02070 ATGGATTGGAATCAGAGCGCAAAACCGTTTGTTCCTCCGCCGGAGCCCCCCTTAAGCTTCTTCTACAACTATAACAACAACAACAACCCATATCCAGAAGGACAAAGGGCATTGATGGAGATAGGAGAAAGGTCGGTTCCGGCAATGGACAACAGAGTCAAAGAGAAGAAGAAGCGGTTAACAAGAAAGCAGATAGAGTTATTGGAGAGGAGTTTTGAGGAGAAGATAAAGTTGGACCCTGAAAGGAAGATGAAGCTTTCCAGGGAGCTAGGCCTCCAGCCTCGCCAAATTGCTGTTTGGTTCCAAAATAGACGTACAAGGTGGAAGAACAAGCAGCTTGAGCACTCGTACGATCTGCTTAAACACCAATATGATGTCATCTCCAAGGAAAATCATGAAGCTTCAACTAGAGCTATGTTTTCTGAGCAGGTTATGAAGTTGAAGGCAATGCTAAGTAGAGAGCAAGGTTTTGGGACGCAAACATTTGGCGGTTATACAGAAATATGTGGAGAAGAAGTAGCAGAAAGCATGTCAGAGGCTCTAAGGGGTTCCAACAAGCCACGGGGAAAGAGTTATAACATTGAGCAGGTTGCAGATCAGAGCTTATGTTCTTTCACTGTGGAGGATTATAACACAGTTTCACTACCTCACTGCCACTGGCCTGTTGTGCCTTATTAG 678 0.4484 MDWNQSAKPFVPPPEPPLSFFYNYNNNNNPYPEGQRALMEIGERSVPAMDNRVKEKKKRLTRKQIELLERSFEEKIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKNKQLEHSYDLLKHQYDVISKENHEASTRAMFSEQVMKLKAMLSREQGFGTQTFGGYTEICGEEVAESMSEALRGSNKPRGKSYNIEQVADQSLCSFTVEDYNTVSLPHCHWPVVPY 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02070 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 175 IPR045224 GO:0003700
Pumo4g02070 225 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Pumo4g02070 225 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Pumo4g02070 225 Gene3D - 49 117 - -
Pumo4g02070 225 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Pumo4g02070 225 CDD homeodomain 54 112 IPR001356 GO:0003677
Pumo4g02070 225 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Pumo4g02070 225 SUPERFAMILY Homeodomain-like 45 113 IPR009057 -
Pumo4g02070 225 SMART HOX_1 54 115 IPR001356 GO:0003677
Pumo4g02070 225 Pfam Homeodomain 54 110 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02070 Pumo-Chr4 29379106 29380971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02070 1 130 Homeobox Transcription Factor Family AT5G03790 45.806 5.39e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pumo4g02070 Homeodomain 1.4e-15 CL0123