Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02067 ATGGAAGTACTTCCTTGTTCTGGTGTTCAGTATGCTGGGGGATCTGATTGCTCTCAGCCAAGTTCAGGAACAACTTTTGTAAACCAGGGAGAACCTAATTGCCCTGAAAGTGGTGATCAGGTTAAATCGGAAGATGATCGACTGAATGACTCATTACAAATGGAAGGGCCTCAGATAGAAAGACAAGGTCAAACACAACAGACTGTTTGTGAACTCTTGACTAATATAGATTGCCAATTTGGTGGAGCTTCATGTTGTGACTGTCAAGTGGAAGGCCAGAAGGAATCCATTAGTTTCCATGATGTTGAAGATGATGGAATAAATGAACCTTGCTTAGCCTTTGAAGACTCTGTTTCTATTGCAGATACAATTGAAACTGAATCACCAAATGATAGTAGGGAAGTAGAGCTGTCATTTTCTGAACCCACTTGGCTGAAGGGGGATGAGCCTGTGGCATTGTGGGTCAAGTGGAGAGGGAACTGGCAGGCTGGTATCAAATGTGCAAGGGCTGACTGGCCATTATCAACTTTAAAAGCAAAACCAACTCATGACCGGAAGAAATATTTTGTCATATTTTTTCCTCACACAAGGAATTATTCTTGGGCAGATATGCTGCTTGTTCGATCAATTGATGAGTTTCCCCAGCCTATTCCATACAAAACTCATCAAGCAGGATTGAAAATGGTAAAAGATTTGACTGTTGCACGGCGGTTTATAATGCAAAAGCTGGCCATTGGTGTACTGAGCATTGTTGATCAGCTTCATCCTAATGCCATGCTAGAAACTGCTCGTGATGTGATGGTTTGGAAGGAATTTGCTATGGAGACTTCTCGTTGTAACAGTTATTCAGATTTTGGCAGAATGCTTCTAAAGCTACAAAATAACATAGTGAAGCACTGCACAAATGCTGACTGGATACAACATTCATCTTACTCTTGGGCTGAACGATGTCAGAATGCAAATAGTGCTGAATCAGTAGAGCTACTGAAGGAGGAGTTGTTTGATTCTATTTTGTGGAATGATGTCAATGCTCTATGGGAAGCACTGGTGCAATCAACATTAGGTTCTGAGTGGAAAACCTGGAAGCATGATGTGATGAAATGGTTTTCCACATCACCTTCCTTTTCTAGCAGCAAGGATATGCAGCAAATGACCTCTGATGGGTTGTACCAAGTAAGCCTTCAAGTTGGTAGAAAAAGGCCCAAGCTTGAAGTTCGTCGTGCAGATACGTATGCTTCACTGGTGGAAACAAATGGTTCAGATCACCCAATTACTCTTGAAACTGACCCGGGTTTCTATAGGAATCAGGACACATTGAGTACATTAGCAGCCGAGACCTCTACACACAAAGATGTTAAGGAGGTACCGGTGGCAACTGATTTACCTAGTAATTTGACCAATAAATGGAATGAAATTGTAGTTGAGGCTACCGATTCTGAGATCTTGCATGGCAATGGAAAGGAATCAACACCTATGAATGAGATGGCTGGTAAAAAAATTGTAGAACCTGGTACTAAGAATCGACAATGCATAGCTTATGTTGAAGCCAAGGGAAGACAATGTGTGAGATGGGCAAATGATGGTGAGGTATACTGTTGTGCGCATTTGTCATCTCGTTTTTTGGGCAGCTCAGGGAAAGCTGAAAAACCTGTTTCAGTTGATACTCCAATGTGTGGAGGTACAACTGTTCTTGGTACTAAATGTAAGCATCATGCCCTTCCTGGCTCTTCATTCTGTAAGAAACACCGTCCCCATGCTGAAACAGATGAGACCTCAAATTTATCCCGTATTACACTGAAGAGAAAACATGAAGAAAATCACATTGGTTCAGAGGGCTTGATCAGCAAAGACATGGTATTGATAAATGCTGAAAGTTCATTGCAAGTAGAACCAGTGCCAGCTGTTGATGATGATTCCTTCCTTGAAAGAAGCAACTTAGATGAGAGGCCCATCCTTTCTGGCAATGATCAGATTGCAATGGAGGCACTTCACTGTATAGGCTCTCCTCCTTATGATAACAAGGACCCTTGTTTGGAAGTACCAAAGCGGTATTTCTTGTATTGTGAAAAGCATCTTCCAAGCTGGCTTAAACGTGCAAGAAATGGAAATAGTAGGATAATATCAAAAGAAGTGTTCACAGAAATTTTAAGGAACTGCTGCTCATGGAAGCAAAAGGTGCACCTGCATAAAGCATGTGAGCTTTTTTACAGGCTATTCAAAAGCATTTTGTCACAAAGAAGCCCAGTTTCTAAGGAAGTTCAGTTCCAGCAGGCTTTAACTGAAGCCTCAAAAGATATTAGTGTTGGAGAATTCCTTACAAAGTTGGTTCATAGTGAAAAGGAGAGAATCAAATTGATTTGGGGATTCAATGATGAAATAGATGTATCCTCACTCTTGGAAGGACCACCTCTTGTTCCTTCCACAGATAATGACAGCTTTGAGTATGAAAATGCCATTAAGTGTAAGATTTGCTGTGCAAAATTTCCTGATGACCAAACTCTTGGTAACCATTGGATGGACAACCATAAAAAGGAAGCACAGTGGCTGTTCAGAGGTTATGCTTGTGCCATTTGTCTGGATTCTTTTACAAACAAGAAGCTATTGGAAACCCATGTTCAAGAGAGACACCATGTGCAGTTTGTTGAACAGTGCTTGCTTCTCCAATGTATTCCTTGTGGTAGTCATTTTGGAAATATGGAGCAGTTATGGCTGCATGTACTATCAGTCCACCCTGTTGAATTCAAGCCATCAAAAGCTCTTGAGAAGCAAACTTTGCCTACTTGTGAGGACTCTCCAGAAAAACTTGAGCAGGGAAATTCAACTTCTTTGGAGAATAATTCTGAGAATCCAGGTGGTTTGCGGAAGTTTGTTTGCCGGTTTTGTGGGTTAAAATTTGATTTACTACCTGACCTGGGTCGCCATCATCAAGCTGCTCATATGGGGCGCAATCTAGGTAGCAGCCGTTCTACAAAAAGGGGAGTTCGTTATTATACTCATAGGTTAAAATCTGGCAGACTTAGCCGTCCTAGATTTAAAAATAGTTTGGCAGCAGCATCGTTTAGAATCAGGAATAGGGCTAATGCTAATTTAAAGAGACACATTCAGGCAACAAAGTCACTTGACATGGTGGAAACAATGATAAAACCTGATGTAACTGAGACAGCAAATATTGGTAAGTTGGCAGAATATCAATGCTCGGCAGTTGCAAAGATTTTATTTTCTGAGATTCAGAAGACTAAACTGCGGCCTAACAATCTTGATATCTTGTCTATTGGTCGTTCTGCATGCTGCAAAGTTAGTCTTAAAGCCTCACTGGAGGAGAAATATGGAATTTTGCCTGAAAGGCTCTATTTGAAGGCAGCAAAACTTTGCAGCGAGCATAACATTCTGGTGAATTGGCACCAGGATGGATTCATTTGTCCTAGGGGTTGTAAGGTTTTGAAGGACCAAAGACATCTCTCTCCCGTAGCATCTCTTTCTAATGGTTTCCTAAAGCCAAGATCTGTAATTTTATCAGATCCTGCAAGTGACGAGTTGGAGGTGGATGAGTTTCACTACATCATTGATTCACATCATTTAAAAGTAGGGTCCTTACATAAGGTTACTGTCTTGTGTGACGACGTAAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTAGTAGATCAAGATATTCTAAACTCTCCTCTTAGGCTTGGGTCCAATGAGGAAGATATAAATCTCTCTAGGCCTTGGGAGAGCTTTACCTATGTTACGAAGCCAATGCTTGATCAATCACTTAGTCTTGATTCTGAGAGTCTGCAACTAAGATGTGCTTGCTCATTTTCTGCCTGCTGTCCTGAAACATGTGATCACGTCTACCTTTTTGATAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGTAGGTTCCCATATGATGAGAATGGTCGAATAATATTGGAGGAAGGTTACCTTGTGTATGAATGTAACCAGATGTGCAAATGCAATAAAACCTGTCCAAACAGAATATTGCAGAATGGAATACGGGTTAAATTGGAAGTCTTTAAAACAGAGAAGAAGGGATGGGCAGTAAGGGCTGGTGAGGCTATCCTTCGTGGCACATTTGTGTGCGAGTACATTGGAGAGGTTTTAGATAAGCAGGAGGCACACAACCGGCGCAAAAGATATGGCAAAGAACACTGCAGTTATTTCTATGACGTTGATGATCATGTTAATGATATGAGCAGATTGATTGAAGGACAGGCCCATTATGTCATTGATACTACTAGATTTGGAAATGTCTCTAGGTTCATCAATAGCAGCTGCTCGCCCAATCTAGTGAGTTACCAAGTTCTTGTAGAGAGCATGGATTGTGAGCGTGCACATATTGGTCTTTATGCAAATCGAGATATTGCTTTGGGTGAAGAATTGACATATAATTATCATTATGAGCTTGTGCCTGGAGAGGGATCTCCTTGCCTTTGTGATTCTGTGAAGTGCCGGGGACGCCTTCCCTCACAATGGCAGAATCGTGCCTACTATCTCTCTCTTCCCTCTTCTACACCAAAAACAAATCCCCTTCTCCCGCAATTCACTCTTAAGCCCCTCAACCATGCCCCAATTCTTTGCTCTTTCCCCTTACCATCAAGACAACTCGTCACTCCCCTTTCCTCATATTCATGGCCTAGACATCGGATTATGCCTAAGAAGAAGCTGCGTTGGAGAACCAAGGTGACACCCATGTGGGGAATTGAAGAAGGTGGCGATGACATAGAAGATGGCGGGGGAGCATTAGAGCCAGTTGTTAGTGACTTGGGTTCATCAAAGAAGCCCAATCTTCTTAGTGAAGTCGGCACCCCAATGGTCAGCGCCGCTGCAAGAGACGCGACTGTAGTTGACGAGGATGAGGTTGTGAGAGGCGTTGTAGGCAGCGGGATAAACGTCGACGAGCTCAACGGAGGAGACGAGGGGGGCGTCGACGGAGAAGACAAGGGGGCATCGGTGCAGAAGCCGTAA 5010 0.4238 MEVLPCSGVQYAGGSDCSQPSSGTTFVNQGEPNCPESGDQVKSEDDRLNDSLQMEGPQIERQGQTQQTVCELLTNIDCQFGGASCCDCQVEGQKESISFHDVEDDGINEPCLAFEDSVSIADTIETESPNDSREVELSFSEPTWLKGDEPVALWVKWRGNWQAGIKCARADWPLSTLKAKPTHDRKKYFVIFFPHTRNYSWADMLLVRSIDEFPQPIPYKTHQAGLKMVKDLTVARRFIMQKLAIGVLSIVDQLHPNAMLETARDVMVWKEFAMETSRCNSYSDFGRMLLKLQNNIVKHCTNADWIQHSSYSWAERCQNANSAESVELLKEELFDSILWNDVNALWEALVQSTLGSEWKTWKHDVMKWFSTSPSFSSSKDMQQMTSDGLYQVSLQVGRKRPKLEVRRADTYASLVETNGSDHPITLETDPGFYRNQDTLSTLAAETSTHKDVKEVPVATDLPSNLTNKWNEIVVEATDSEILHGNGKESTPMNEMAGKKIVEPGTKNRQCIAYVEAKGRQCVRWANDGEVYCCAHLSSRFLGSSGKAEKPVSVDTPMCGGTTVLGTKCKHHALPGSSFCKKHRPHAETDETSNLSRITLKRKHEENHIGSEGLISKDMVLINAESSLQVEPVPAVDDDSFLERSNLDERPILSGNDQIAMEALHCIGSPPYDNKDPCLEVPKRYFLYCEKHLPSWLKRARNGNSRIISKEVFTEILRNCCSWKQKVHLHKACELFYRLFKSILSQRSPVSKEVQFQQALTEASKDISVGEFLTKLVHSEKERIKLIWGFNDEIDVSSLLEGPPLVPSTDNDSFEYENAIKCKICCAKFPDDQTLGNHWMDNHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCLLLQCIPCGSHFGNMEQLWLHVLSVHPVEFKPSKALEKQTLPTCEDSPEKLEQGNSTSLENNSENPGGLRKFVCRFCGLKFDLLPDLGRHHQAAHMGRNLGSSRSTKRGVRYYTHRLKSGRLSRPRFKNSLAAASFRIRNRANANLKRHIQATKSLDMVETMIKPDVTETANIGKLAEYQCSAVAKILFSEIQKTKLRPNNLDILSIGRSACCKVSLKASLEEKYGILPERLYLKAAKLCSEHNILVNWHQDGFICPRGCKVLKDQRHLSPVASLSNGFLKPRSVILSDPASDELEVDEFHYIIDSHHLKVGSLHKVTVLCDDVSFGKESIPVICVVDQDILNSPLRLGSNEEDINLSRPWESFTYVTKPMLDQSLSLDSESLQLRCACSFSACCPETCDHVYLFDNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNQMCKCNKTCPNRILQNGIRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDKQEAHNRRKRYGKEHCSYFYDVDDHVNDMSRLIEGQAHYVIDTTRFGNVSRFINSSCSPNLVSYQVLVESMDCERAHIGLYANRDIALGEELTYNYHYELVPGEGSPCLCDSVKCRGRLPSQWQNRAYYLSLPSSTPKTNPLLPQFTLKPLNHAPILCSFPLPSRQLVTPLSSYSWPRHRIMPKKKLRWRTKVTPMWGIEEGGDDIEDGGGALEPVVSDLGSSKKPNLLSEVGTPMVSAAARDATVVDEDEVVRGVVGSGINVDELNGGDEGGVDGEDKGASVQKP 1669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02067 1669 ProSitePatterns Zinc finger C2H2 type domain signature. 958 979 IPR013087 -
Pumo4g02067 1669 Pfam SET domain 1359 1479 IPR001214 GO:0005515
Pumo4g02067 1669 ProSiteProfiles Zinc finger C2H2 type domain profile. 956 984 IPR013087 -
Pumo4g02067 1669 Gene3D SET domain 1187 1484 IPR046341 -
Pumo4g02067 1669 ProSiteProfiles Pre-SET domain profile. 1269 1345 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo4g02067 1669 ProSitePatterns Zinc finger C2H2 type domain signature. 889 910 IPR013087 -
Pumo4g02067 1669 SMART c2h2final6 956 979 IPR013087 -
Pumo4g02067 1669 SMART c2h2final6 819 842 IPR013087 -
Pumo4g02067 1669 SMART c2h2final6 887 910 IPR013087 -
Pumo4g02067 1669 SMART c2h2final6 853 876 IPR013087 -
Pumo4g02067 1669 ProSiteProfiles Zinc finger C2H2 type domain profile. 853 876 IPR013087 -
Pumo4g02067 1669 ProSitePatterns Zinc finger C2H2 type domain signature. 821 842 IPR013087 -
Pumo4g02067 1669 MobiDBLite consensus disorder prediction 923 949 - -
Pumo4g02067 1669 MobiDBLite consensus disorder prediction 1644 1669 - -
Pumo4g02067 1669 ProSiteProfiles Post-SET domain profile. 1487 1503 IPR003616 -
Pumo4g02067 1669 ProSiteProfiles SET domain profile. 1348 1480 IPR001214 GO:0005515
Pumo4g02067 1669 MobiDBLite consensus disorder prediction 13 46 - -
Pumo4g02067 1669 SUPERFAMILY SET domain 1197 1493 IPR046341 -
Pumo4g02067 1669 SMART preset_2 1205 1332 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo4g02067 1669 MobiDBLite consensus disorder prediction 933 949 - -
Pumo4g02067 1669 MobiDBLite consensus disorder prediction 13 36 - -
Pumo4g02067 1669 Pfam Zinc finger C2H2-type, 3 repeats 855 980 IPR040689 -
Pumo4g02067 1669 Gene3D Classic Zinc Finger 807 879 - -
Pumo4g02067 1669 SMART set_7 1348 1486 IPR001214 GO:0005515
Pumo4g02067 1669 MobiDBLite consensus disorder prediction 1655 1669 - -
Pumo4g02067 1669 Pfam Pre-SET motif 1209 1340 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pumo4g02067 1669 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02067 Pumo-Chr4 29308843 29328826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02067 134 1502 C2H2 Transcription Factor Family AT2G23740 50.396 0.0 1348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo4g02067 Pre-SET 1.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02067 - - gmx:100808203 2803.47