LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g02055	ATGGCTTCGAATCTCATTGTTTTCTTCACTGTTCTTCTTACCTTCTTCCTTCCTCTCAAATCTCACTCCTCTACAGAAAACCCTTCGTGGGTGAAAGCCGGTTATTACTATTCAGGCAGTGAAATTTCTGCTTCAGACATAGAAGCCAAGCTTTTCACTCACCTTTTATGCGCTTTTGCTTTCATAAACTCCACCAGCTACAACATCTTCATCAACTCTTCTGAGGAGCACAAGTTCTTCGCCTTCACCAGCACGGTGAAGCTCCAAAACCCATCTGTTTCAACGCTTCTATCCATCAGGGGTGGCAGAGAGGACTCGTCAGTGTTCACCTCAATGCTAAACCAATCTTCTCATAGAAAAATTTTCATTGATTCTTCAATCAGAACAGCCAGGCTCTATGGCTTCCATGGCATAGACCTCACTGGGGCATGGCCAAGGCAAGAGGGTTCGGAGGTTACAAATTTTGGAACCCTTTTGAAGGAATGGCGTGCTGCAATAACTTCTGAGGCAAGAAACTCAAGCAAGCCAGAGTTGTTGTTGGTGATGGCTGGTTACTACCTCAAGGCTTCAGACACTTTGAGTTACCCCTTTGATTCAATGCAGGAGAATTTGGATTGGGTGAATTTTGTGGCATATGATTACTATCTTCCTAAGAGGGACAATGTCACAGGCTTTAGTGCAGCTTTGTATGGTTCATCTGGTTGGGATAACACTGATTCTGGCATCAAAGAGTGGAGGAGGAGGGGGTTTTCGTCTAAGAAGCTGTTAATTGGGTTGCCTTATCATGGATATGCGTGGACACTTGTGAACCCTGGAGGAAACAGTGGCGTGGGAGCACCAGCATCAGGACCTGCTGTTACAATGGATGGTTCCATGGCTTATAAGTTAATAAAGAGTTACATTAGAAGCTTTGGAAATGTTGTTTCACATTACAATGCTAGTTTTGTGGTGAGCCAGTTCACTGTTGCGTCCACCACTTGGGTTAATTTTGATGATGCGCAGGTAATCAGGGCCAAAGTTTCTTATGCAAGGAAAAATGGGCTACTTGGTTACAACGTGTTCCAAGTAGGCAATGACGAAAATTGGGAACTTTCAAGGGCAGTTTCTGAAATAACATATGCATCACTTCCTTTGCAACACAATCCTTCAGCTCAAGAAGTAGATGAAGAAATTAAAGATAATCATAAGAGGAGGCTTGGAGAGGGTGGATTTGGCACAGTGTACAAGGGAAAATTACGGAATGGTCAGGAAATAGCTGTAAAAAGACTCTCAGAGACCTCAAATCAAGGCCTTGAAGAGTTCAAGAATGAGATCACGCTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTCTGGGTTACTGCACAAAAAGGGATGAGAAGATTCTGATCTATGAATACCTCCCAAACAAAAGCTTAGATCATTTCCTCTTTGATCCAAGGAAATCAGTTCTTTTAGACTGGAACAAGCGTGTCAATATCATTGAAGGCGTTACTCATGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATCCACCGAGATCTTAAAGCTAGTAATGTTTTGCTAGATCACGAGATGAATCCGAAGATAGCAGACTTTGGTATGGCTAGAATTTTCAGGAAATATGACCTTGAAGCAAACACAGAAAGGATCGTTGGAACATATGGGTATGTACCTCCTGAGTATGTGAGAAAAGGCATATACTCAACGAAGTACGATGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGCGGAAAGAGGACTTCATGTTATTATGGCACACATGAAAATATGACCCTTTTGGAATATGCATACGAGCTGTGGAGGGAAGGTAGAGGTGTGGAGTTTGTTGACCCGTCATTGGATGATACAACATCACCTTGTAAAATCATGAGATGCATGCATGTGGCTCTGTTGTGCGTTCAAGACAACTCTGCAGATAGACCTTCCATGTTGGAAGTTGATTCACTGCTGAAGAATGAAGGTGCAGCTATTGGTACTCCCAAAATGCCTGCGTTTTCAGTTAATAAACGTGAAGATGAGGAACAAACATCTCACAGTGGGATCAAATTTTATTCAATCAATGATGTTACAATTTCTCAACTGGCACCAAGATGA	2136	0.4195	MASNLIVFFTVLLTFFLPLKSHSSTENPSWVKAGYYYSGSEISASDIEAKLFTHLLCAFAFINSTSYNIFINSSEEHKFFAFTSTVKLQNPSVSTLLSIRGGREDSSVFTSMLNQSSHRKIFIDSSIRTARLYGFHGIDLTGAWPRQEGSEVTNFGTLLKEWRAAITSEARNSSKPELLLVMAGYYLKASDTLSYPFDSMQENLDWVNFVAYDYYLPKRDNVTGFSAALYGSSGWDNTDSGIKEWRRRGFSSKKLLIGLPYHGYAWTLVNPGGNSGVGAPASGPAVTMDGSMAYKLIKSYIRSFGNVVSHYNASFVVSQFTVASTTWVNFDDAQVIRAKVSYARKNGLLGYNVFQVGNDENWELSRAVSEITYASLPLQHNPSAQEVDEEIKDNHKRRLGEGGFGTVYKGKLRNGQEIAVKRLSETSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKRDEKILIYEYLPNKSLDHFLFDPRKSVLLDWNKRVNIIEGVTHGLLYLQEYSNFTIIHRDLKASNVLLDHEMNPKIADFGMARIFRKYDLEANTERIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGTHENMTLLEYAYELWREGRGVEFVDPSLDDTTSPCKIMRCMHVALLCVQDNSADRPSMLEVDSLLKNEGAAIGTPKMPAFSVNKREDEEQTSHSGIKFYSINDVTISQLAPR	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g02055	711	FunFam	Uncharacterized protein	404	468	-	-
	Pumo4g02055	711	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	30	375	IPR001223	GO:0005975
	Pumo4g02055	711	Gene3D	Glycosidases	45	360	-	-
	Pumo4g02055	711	ProSiteProfiles	Protein kinase domain profile.	393	664	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g02055	711	Gene3D	Transferase(Phosphotransferase) domain 1	470	671	-	-
	Pumo4g02055	711	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	396	709	-	-
	Pumo4g02055	711	Gene3D	-	261	330	IPR029070	-
	Pumo4g02055	711	CDD	STKc_IRAK	399	666	-	-
	Pumo4g02055	711	Pfam	Protein tyrosine and serine/threonine kinase	396	660	IPR001245	GO:0004672\|GO:0006468
	Pumo4g02055	711	SUPERFAMILY	Protein kinase-like (PK-like)	396	688	IPR011009	-
	Pumo4g02055	711	SUPERFAMILY	(Trans)glycosidases	30	377	IPR017853	-
	Pumo4g02055	711	SMART	serkin_6	393	664	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g02055	711	Pfam	Glycosyl hydrolases family 18	35	359	IPR001223	GO:0005975
	Pumo4g02055	711	ProSitePatterns	Protein kinases ATP-binding region signature.	399	421	IPR017441	GO:0005524
	Pumo4g02055	711	FunFam	Uncharacterized protein	469	673	-	-
	Pumo4g02055	711	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	514	526	IPR008271	GO:0004672\|GO:0006468
	Pumo4g02055	711	SUPERFAMILY	Chitinase insertion domain	263	331	IPR029070	-
	Pumo4g02055	711	Gene3D	Phosphorylase Kinase; domain 1	399	469	-	-
	Pumo4g02055	711	SMART	2g34	30	359	IPR011583	GO:0008061

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g02055	Pumo-Chr4	29095660	29100299	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g02055	399	711	Receptor kinase-like Gene Family	AT4G11530	52.960	3.14e-111	349

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pumo4g02055		Glyco_hydro_18	1.2e-55	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g02055	-		-	aprc:113847882	1130.93