Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02031 ATGATCCAAGAACTGTTGGGTGGTGCTAGCCTCATAGCAGGAGAAAGAAAACCCTCCATTAATGGAGGAGGAGGAGGAGGAGGAGGAGGGGTTCTACTCCCAACTACACCATCTCCTTCTTCTCTTCCTTCTTCCACAACCAATAGCGTCACCCCTACATCCACAACAACCACTATTACTGCTACTACTACCACTACTACTGTGGAAAACCTGAGGTGCCCGCGATGCGATTCATCGAACACCAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCACGCCACTTCTGCAAGACGTGCCGCCGCTACTGGACCAAAGGCGGCGCTCTCCGGAACGTTCCCATCGGCGGTGGCTGCCGGAAAAACAAGAGCATCGGCGTGGCGAACTCGGTGGCAAAGACAGCCTCAACCAAGATGAAAACAGTTGCATCTGAGCTTGGAAAATCACCAGGCTTCGGTGGGTTTGAAGTTGAACATGAGCTTCCACTACCGAGCCAAATCCTTTGGGGTTCACCCCAAAACAACCACCTTCTGGCTTTGCTGAGAGCTACTCAAAATCAAAACCCTAACCCTAACCCTAGTCCCGTGTCCATCAAGGAAGAAGGGACCCTAATGGGCCACATGGTGAGCACCGAGCCCTTGGTTTCAAATGCTTTGCTGAGTCACCGAACCTTAGGCTATGATGCGGTTGCGCAAGTTCCTTCGCTTGGTCTGTTTGGGAGAAACAATCAAGATCAACAACAAAATGGGGGGTTCCTACTTGGGGAACATCACAACAGTGGAATTCAAGAGCTTTACCAGAAGCTAAGGTCATCATCGGTTAATAATTATTGCAGTGATAATTCGTCACAAGTGTTTATGGGGAACATGGCTTCTAATTATTCCTCTTCTGTGTCCAACAACATTTTGGACACAACTTCGGTTGCTGGGGGTGAATTCGGATATTGGAATGGTCCAACCTTTTCTTGGTCTGATCTTCCAACCACTAATGGCACTGGTGCATACTCATAA 1014 0.4882 MIQELLGGASLIAGERKPSINGGGGGGGGGVLLPTTPSPSSLPSSTTNSVTPTSTTTTITATTTTTTVENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSIGVANSVAKTASTKMKTVASELGKSPGFGGFEVEHELPLPSQILWGSPQNNHLLALLRATQNQNPNPNPSPVSIKEEGTLMGHMVSTEPLVSNALLSHRTLGYDAVAQVPSLGLFGRNNQDQQQNGGFLLGEHHNSGIQELYQKLRSSSVNNYCSDNSSQVFMGNMASNYSSSVSNNILDTTSVAGGEFGYWNGPTFSWSDLPTTNGTGAYS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02031 337 MobiDBLite consensus disorder prediction 14 58 - -
Pumo4g02031 337 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
Pumo4g02031 337 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Pumo4g02031 337 MobiDBLite consensus disorder prediction 34 58 - -
Pumo4g02031 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 65 270 IPR045174 GO:0003700|GO:0006355
Pumo4g02031 337 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02031 Pumo-Chr4 28647569 28649129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02031 37 135 C2C2-Dof Transcription Factor Family AT5G65590 57.576 3.59e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo4g02031 zf-Dof 9.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02031 - - gmx:778108 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01915 8 55635811 55637698 Pumo4g02031 4 28647569 28649129 PCT