Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02013 ATGATGATAGTGATACCATGCGGCGCGTGCAAGTACCAACGGCGGCGGTGCAGGCTGGACTGCCTGTTCGCGCCGCACTTTCCGGCGGAGAACATTCAACGGTTCGCGTGCGTGCACCACGTGTTCGGCGGTGGTAACGTGGGGAACATGCTGAAGATCACGAAGCCGGAGTTGCGCGGGTCGATGGTGAGGACGCTGGCGTACCAAGCGGAGGCGCGTGTGAGGGACCCCGTGCACGGGTGCGTGGGCCTCATATGGGAGCTGGAGCAAAATCTCCGTAAGGTGAAAGAGGACCTCGCCAAGGCCCAAACGGAGCTGGCCCAATACATGGGCCCAGAGTTTGTGCGAGAGCTGAGTCCCAGTTATGGTGGTGGGCCTTCTTCCAAAGGTAAGGCTGTGGCGCTTCCGCAGCCGGCTATGGTGGAGCTTGACGCTGCTCCCTCTATAGCCGTTGATGTTGATGATCTTGAGAAGTGGGACCCTTTTCCGCCTTGGGATGCTAGTTTTCACAATGTTGGTCCTTCTTCTTCTTCTTCTTCTTCTTCCCAGATACAGCAGCCACAGGGTGAAGGTGGGAATGGGAAGGGTAAGCGTAAGAGCTTCGCTCCTTAA 612 0.5768 MMIVIPCGACKYQRRRCRLDCLFAPHFPAENIQRFACVHHVFGGGNVGNMLKITKPELRGSMVRTLAYQAEARVRDPVHGCVGLIWELEQNLRKVKEDLAKAQTELAQYMGPEFVRELSPSYGGGPSSKGKAVALPQPAMVELDAAPSIAVDVDDLEKWDPFPPWDASFHNVGPSSSSSSSSQIQQPQGEGGNGKGKRKSFAP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02013 203 Coils Coil 85 105 - -
Pumo4g02013 203 MobiDBLite consensus disorder prediction 162 203 - -
Pumo4g02013 203 MobiDBLite consensus disorder prediction 170 190 - -
Pumo4g02013 203 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Pumo4g02013 203 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Pumo4g02013 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02013 Pumo-Chr4 27580413 27581204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02013 2 115 AS2 family AT2G23660 50.000 1.76e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo4g02013 LOB 8.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02013 - - gmx:102663028 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02013 4 27580413 27581204 Pumo4g02013 4 27580413 27581204 ECH
Pumo4g02013 4 27580413 27581204 Pumo8g01927 8 55743572 55745478 PCT